PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438836.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 749aa    MW: 82722.9 Da    PI: 5.265
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1957112156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +rk  ++t++q+ eLe++F++n++p+++ r eL kkl+++ +qVk+WFqNrR+++k
  XP_016438836.1  57 KRKYSRHTANQILELETAFKENPHPNEKVRLELGKKLSMDSKQVKFWFQNRRTQMK 112
                     79999************************************************998 PP
2START166.61.8e-522624842205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+ +a+ +ep+Wv+s     e +n +e+ ++f++  +     + +ea ra+g v+ ++ +lve+l+d + +W e++     k ++++
  XP_016438836.1 262 LALAAMNELLGLAEIGEPLWVRSLdgggETLNLEEYARSFTPCTGmkpghFATEATRATGTVIVNSLTLVETLMDMS-RWVEMFScivgKTSVVN 355
                     6899************************************99888999999**************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vi         + lql+++e+q +s lvp R+  f+R+++q+ +g+w++vdvSvd  q+ ++ +++  +++lpSg+++++++ng+skvtw+eh++
  XP_016438836.1 356 VIPGStcgswsSNLQLIQTEFQIISDLVPaREMKFLRFCKQQAEGVWAVVDVSVDTVQESSQPHEIGNCRRLPSGCIVQDMPNGYSKVTWIEHME 450
                     **9999******************************************************9999******************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     + +++ h l+r+lv++gl +ga++w+atlqrq e
  XP_016438836.1 451 YYENVLHHLYRPLVRNGLGFGAQRWMATLQRQSE 484
                     *******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1844112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1853121IPR009057Homeodomain-like
PROSITE profilePS5007117.45954114IPR001356Homeobox domain
SMARTSM003892.8E-1656118IPR001356Homeobox domain
PfamPF000461.9E-1657112IPR001356Homeobox domain
CDDcd000862.84E-1657114No hitNo description
PROSITE profilePS5084840.138252488IPR002913START domain
SuperFamilySSF559613.16E-30254484No hitNo description
CDDcd088752.32E-104256484No hitNo description
SMARTSM002341.0E-39261485IPR002913START domain
PfamPF018528.8E-45262483IPR002913START domain
SuperFamilySSF559614.03E-11510741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MESHSDMSEK GESSNNVVMG RPKEEDESES RSNGDNFLNG VASEDEPDSV LSNSSRKRKY  60
SRHTANQILE LETAFKENPH PNEKVRLELG KKLSMDSKQV KFWFQNRRTQ MKSHLERHEN  120
GILKQENDRL RIEHIAMQGA MKHPICNRCR NQAIIADINV EEHQTKIEYE RLKEEVKRIS  180
VLADKLLGPL SSLEGSMASV IANPAFGLPE GINGFGGINY ANAASPMGLD FDNGLSSPPP  240
VIISRSLANV DASYDKSMLM DLALAAMNEL LGLAEIGEPL WVRSLDGGGE TLNLEEYARS  300
FTPCTGMKPG HFATEATRAT GTVIVNSLTL VETLMDMSRW VEMFSCIVGK TSVVNVIPGS  360
TCGSWSSNLQ LIQTEFQIIS DLVPAREMKF LRFCKQQAEG VWAVVDVSVD TVQESSQPHE  420
IGNCRRLPSG CIVQDMPNGY SKVTWIEHME YYENVLHHLY RPLVRNGLGF GAQRWMATLQ  480
RQSEFLAMLM SSVDSPVVCS SGQTSMAMLA QRMTRNFCAG VCATIHKWES IQQANGEDAK  540
LMMRKNIGDP GEPIGVVLSA TKTIWLPVKQ QRLLDFLLNE QTRSQWDILF NSGPMQQLVH  600
IAKGQNIDNS ISLFRANVDA ISDSENNMLI LQDTCTDATG SLIVYATIDA VDMDVVMNGG  660
DSSSVAFLPS GIAIVPDCFQ DYSGANNCNV ETSWEKDNGF SGTGSLVTIG FQVLVNSSPA  720
EKLSMESVQK VNNLISHTIH GIKASFKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771833.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1U7VZN60.0A0A1U7VZN6_NICSY; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_009771833.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]