PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438722.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 302aa MW: 32861.1 Da PI: 6.3676

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_016438722.1 39 KPRLRWTADLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-31	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.614	36	96	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-23	39	93	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.51E-16	39	95	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-8	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-16	123	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MFPRLIQPPG EDEYNMNIGI HHTHNINGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG 60 GPSKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGLTATYS LESPCSGGTP QQLPASDLNE 120 GYEVKEALRA QMEVQSKLHL QVEAEKHLQI RQDAEQRYIS MLEKACKMLA DQFIGGVATE 180 NDQETCQGLG TRTQVTPLCN PLGLCPSESA DLVGVHGPEE VSPRIHPQFT DCSTESCLTS 240 HESPAGLPLE GTSTGGKKRG PNGDSTHASV VWGEADMISS GVRLLQVNRF GITSSNVQNV 300 SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	39	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	39	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	39	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	39	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	39	99	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ718036	0.0	AJ718036.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT23-3-460, cultivar Bright Yellow 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802389.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X2
Refseq	XP_016438722.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X2
TrEMBL	A0A1S3XFS7	0.0	A0A1S3XFS7_TOBAC; protein PHR1-LIKE 1-like isoform X2
TrEMBL	A0A1U7YT41	0.0	A0A1U7YT41_NICSY; protein PHR1-LIKE 1-like isoform X2
STRING	XP_009802388.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-65	G2-like family protein