PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016438630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 38358.6 Da PI: 8.2945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl XP_016438630.1 14 RGPWSPEEDAKLKDFIHKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.3 | 1.3e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + + G++ W+ Ia+ ++ gRt++++k++w++ XP_016438630.1 69 GDFSEEEDRVICTLYSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.358 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.766 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.85E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDRVIC TLYSTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKPMGL 120 MQSTNQRKSP YFPATNSLQT QPQINSSLFR DLYYTPNNRP NITGLNHQSI SSAHQTNFLY 180 TNNNMNFPNL GATNNQYPYN IQSHNLLMFG EASCSSSDGS CSQMSFGKEI KREEIMSNSL 240 QQGQISSVNA FEENHQNFTL DYGNSSSNWV DQKPNVYFGT TTTQVLQYDN VEEVKQQLTS 300 CTNGNNGSTI GCNNNNSMFV FNDENYNKSN EIEMFYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438630.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S3XFI7 | 0.0 | A0A1S3XFI7_TOBAC; transcription factor RAX2-like | ||||
STRING | XP_009800575.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-79 | myb domain protein 36 |