PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438501.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 18879.6 Da    PI: 9.3627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr+g+lKKA+ELS+LCda+vav++fs+++++y++ss
  XP_016438501.1  9 KRIEDKSSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRDRIYDFSS 59
                    79***********************************************96 PP
2K-box41.17.4e-15881551784
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      + ++a      + Lq+  R+l    +++Ls+ +L +Le+qL ++l ++Rs K++l++e+i+ l++k 
  XP_016438501.1  88 EHSKYASFMTVGQLLQTVGRQLEEPAVDDLSVTDLVHLENQLPTALMQVRSSKTHLMIESIKSLREKV 155
                     3444556667778999*9***********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-30279IPR002100Transcription factor, MADS-box
CDDcd002651.56E-35273No hitNo description
PRINTSPR004045.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.45285166IPR002487Transcription factor, K-box
PfamPF014866.6E-10100155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRKKVEIKR IEDKSSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RDRIYDFSST  60
NSLTEIVHRY HSHVEAEKES SAEVLDTEHS KYASFMTVGQ LLQTVGRQLE EPAVDDLSVT  120
DLVHLENQLP TALMQVRSSK THLMIESIKS LREKVGVIGY YRGPNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-21187187Myocyte-specific enhancer factor 2B
1tqe_Q9e-21187187Myocyte-specific enhancer factor 2B
1tqe_R9e-21187187Myocyte-specific enhancer factor 2B
1tqe_S9e-21187187Myocyte-specific enhancer factor 2B
6c9l_A9e-21187187Myocyte-specific enhancer factor 2B
6c9l_B9e-21187187Myocyte-specific enhancer factor 2B
6c9l_C9e-21187187Myocyte-specific enhancer factor 2B
6c9l_D9e-21187187Myocyte-specific enhancer factor 2B
6c9l_E9e-21187187Myocyte-specific enhancer factor 2B
6c9l_F9e-21187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438501.11e-119PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1S3XES91e-118A0A1S3XES9_TOBAC; agamous-like MADS-box protein AGL27 isoform X2
STRINGXP_009595701.11e-106(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-43MIKC_MADS family protein