PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016438332.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 375aa MW: 41406.1 Da PI: 6.7769

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016438332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.7	1.4e-07	52	86	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv XP_016438332.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHV 86 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-5	54	87	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAGTASSPAL SNHSADSAPS PASAPAATTV TAAVVSSHPT INASKNLRGL NKPKCIKCGN 60 VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSHRG 120 AASLRQLSTN FAQFNNLQTP LRSRKPLTRK DAQLINEWRF MKLKEYRDSN IAAENEAFDR 180 YMQNVGLLEE VFAVNSAEDE RNEDGSTEDD NEATINRLKL QLRSDPTRIE NTRKRMQYIV 240 DQGLRKLRKL ESGDNATDLS DLDALGKKKK AKSAEAEWVV SFTDLIDKLN KARNEEDLKA 300 CWEMKSQLFN QNKKEKQAES DNAEASIEQS SEASVLPTMP SGYSPPKWFS TSTIDDEELR 360 RLNAQFDSLE DIEEL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAGTASSPAL SNHSADSAPS PASAPAATTV TAAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSHRG  120
AASLRQLSTN FAQFNNLQTP LRSRKPLTRK DAQLINEWRF MKLKEYRDSN IAAENEAFDR  180
YMQNVGLLEE VFAVNSAEDE RNEDGSTEDD NEATINRLKL QLRSDPTRIE NTRKRMQYIV  240
DQGLRKLRKL ESGDNATDLS DLDALGKKKK AKSAEAEWVV SFTDLIDKLN KARNEEDLKA  300
CWEMKSQLFN QNKKEKQAES DNAEASIEQS SEASVLPTMP SGYSPPKWFS TSTIDDEELR  360
RLNAQFDSLE DIEEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT779526	0.0	KT779526.1 UNVERIFIED: Capsicum annuum hypothetical protein-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016438332.1	0.0	PREDICTED: uncharacterized protein LOC107764281 isoform X2
TrEMBL	A0A1S3XEM3	0.0	A0A1S3XEM3_TOBAC; uncharacterized protein LOC107764281 isoform X2
STRING	XP_009592240.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	6e-87