PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437862.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 356aa MW: 38858 Da PI: 6.1929

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	156	214	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + e l++e+ XP_016437862.1 156 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRETTGLTNEN 214 9*****************************************99999888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-17	152	216	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	154	217	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	156	211	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-11	156	211	No hit	No description
SuperFamily	SSF57959	6.68E-11	156	211	No hit	No description
CDD	cd14703	1.21E-22	157	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MQDPSNPNSA KLSNQPPSSF SAAAFRPSHH RRAHSEVNFR LPEDLDLASD PFDAPAGSFE 60 EIGSEDDFFS TYMDIEKLGS SGDAAAGGLE NSGGSGGSSR VGADSSDGEK SMMMKPRHRH 120 SNSVDSSSSL LLSESIEAKK AMAPDKLAEL WTIDPKRAKR ILANRQSAAR SKERKARYIS 180 ELERKVQTLQ TEATTLSAQL TLFQRETTGL TNENTELKLR LQAMEQQAQL RDALNEALKQ 240 EVERLKIATG QISASSDAYN SGMQQISYNR PAFFPHQPQP GPSEPPNIQM PQFHTLQESM 300 SSSRHPLLAG HAQALTDAMQ QDPLDRFQGL GINSRSSHLV KTEAPSISAS ESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MQDPSNPNSA KLSNQPPSSF SAAAFRPSHH RRAHSEVNFR LPEDLDLASD PFDAPAGSFE  60
EIGSEDDFFS TYMDIEKLGS SGDAAAGGLE NSGGSGGSSR VGADSSDGEK SMMMKPRHRH  120
SNSVDSSSSL LLSESIEAKK AMAPDKLAEL WTIDPKRAKR ILANRQSAAR SKERKARYIS  180
ELERKVQTLQ TEATTLSAQL TLFQRETTGL TNENTELKLR LQAMEQQAQL RDALNEALKQ  240
EVERLKIATG QISASSDAYN SGMQQISYNR PAFFPHQPQP GPSEPPNIQM PQFHTLQESM  300
SSSRHPLLAG HAQALTDAMQ QDPLDRFQGL GINSRSSHLV KTEAPSISAS ESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-110	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606784.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_016437862.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1S3XDF0	0.0	A0A1S3XDF0_TOBAC; transcription factor RF2b-like
STRING	XP_009606784.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-85	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]