PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016437760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27801.8 Da PI: 8.6713 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.4 | 4.1e-29 | 55 | 112 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + ++YkeCl NhAa++Gg+a+DGCgEfmps geegt + l+C+ C+CHRnFHR+e+e e XP_016437760.1 55 KMMKYKECLENHAAAMGGNATDGCGEFMPS-GEEGTFEFLTCSVCNCHRNFHRKETEGE 112 5789*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-24 | 57 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.9E-26 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.9E-28 | 58 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.679 | 59 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.13E-15 | 171 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 173 | 233 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-24 | 177 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEVPNEEGEM AMPINSAYGH GHMIHHDPAP QNNHIIPSSQ IITSKNGPPI SSNKKMMKYK 60 ECLENHAAAM GGNATDGCGE FMPSGEEGTF EFLTCSVCNC HRNFHRKETE GELVRKVYVG 120 HPHKAFVYPA SRAAPHQMIM SYNNHMGSIP GINQEDGIIN GGCGVMARPL NYQQLVKKRF 180 RTKFSQEQKE KMLNFAEKIG WKMQKQEEAM VQQFCQQVGV KRRLLKVWMH NLAKKNSNDI 240 NTESQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 178 | 231 | 18 | 71 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762039.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like isoform X1 | ||||
Refseq | XP_016437760.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-67 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1S3XCV1 | 0.0 | A0A1S3XCV1_TOBAC; zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A1U7VI87 | 0.0 | A0A1U7VI87_NICSY; zinc-finger homeodomain protein 4-like isoform X1 | ||||
STRING | XP_009762039.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-70 | homeobox protein 31 |