PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437739.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 181aa    MW: 20273.4 Da    PI: 9.0438
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.72.9e-28967458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRreve 58
                      Y+eCl+NhAaslG++a+DGCgEf+ +++++++    +a+l+CaACgCHRnFHR+ + 
  XP_016437739.1  9 NIYRECLRNHAASLGSYATDGCGEFTLDDNNNNNtsprSASLHCAACGCHRNFHRKVMY 67
                    57************************99776644567789****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-231065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-171164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0951165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-231164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.38E-1697167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27100168IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26108166IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQGDKANDNI YRECLRNHAA SLGSYATDGC GEFTLDDNNN NNTSPRSASL HCAACGCHRN  60
FHRKVMYGAS YSNNSSRDRE IVAAELTDYG GGRMSAALTA EESPRSGKKR FRTKFTTDQK  120
EKMLAFAEKL GWTLQRKDQE NETERFCREV GVSRKVFKVW MHNHKNNTSS VSTGNASSLT  180
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211091701878ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-70HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755152e-70HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776697.11e-135PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016437739.11e-135PREDICTED: zinc-finger homeodomain protein 5-like
TrEMBLA0A1S3XD311e-133A0A1S3XD31_TOBAC; zinc-finger homeodomain protein 5-like
TrEMBLA0A1U7W9L71e-133A0A1U7W9L7_NICSY; zinc-finger homeodomain protein 5-like
STRINGXP_009776697.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-40homeobox protein 31