PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437700.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 353aa MW: 39625.3 Da PI: 4.6827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.7	1.5e-06	248	286	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L XP_016437700.1 248 VRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 286 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.436	237	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	247	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-12	247	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-7	247	290	No hit	No description
SMART	SM00353	0.0015	248	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MADEFQVGVC GENSWWNSTK NIFGLSPNCV SSIYDPIGHL ISWPISDLLD MKTKSSDDST 60 LQILGIDLSL PSSTPDWNHS PNDKLDDTYL SMLQEDLNSS LNYQQENAVN CPKLKRNFSS 120 ITEDSSTNSF NKPMNQDFPY YSELLQTLFD TDPNQQPQQS FYTNNQPINC TSSTKYKQNL 180 DDFAPSLPTH LLKPSSEILA NLPNLFSKSN IEEIPESTSS SLSKNSSNEP SYKRPRIETP 240 SPLPTFKVRK EKMGDRITAL QQLVSPFGKT DTASVLQEAI EYIKFLHDQV NVLSNPYMKK 300 GSPTQCQQVK EQEGLKQDLR SQGLCLVPIS STFPATAETT MDFWTPKVGA TFK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MADEFQVGVC GENSWWNSTK NIFGLSPNCV SSIYDPIGHL ISWPISDLLD MKTKSSDDST  60
LQILGIDLSL PSSTPDWNHS PNDKLDDTYL SMLQEDLNSS LNYQQENAVN CPKLKRNFSS  120
ITEDSSTNSF NKPMNQDFPY YSELLQTLFD TDPNQQPQQS FYTNNQPINC TSSTKYKQNL  180
DDFAPSLPTH LLKPSSEILA NLPNLFSKSN IEEIPESTSS SLSKNSSNEP SYKRPRIETP  240
SPLPTFKVRK EKMGDRITAL QQLVSPFGKT DTASVLQEAI EYIKFLHDQV NVLSNPYMKK  300
GSPTQCQQVK EQEGLKQDLR SQGLCLVPIS STFPATAETT MDFWTPKVGA TFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437700.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S3XCN8	0.0	A0A1S3XCN8_TOBAC; transcription factor bHLH112-like
STRING	XP_009617305.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-50	bHLH family protein