PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437637.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 190aa    MW: 21362 Da    PI: 6.2942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1964115256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g+
  XP_016437637.1  64 HYIGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDTAEEAAMAYDQAALSMRGP 115
                     799******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-2963122No hitNo description
PROSITE profilePS5103222.03664122IPR001471AP2/ERF domain
PfamPF008476.4E-1464114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3064123IPR001471AP2/ERF domain
SMARTSM003805.5E-3464128IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2364124IPR016177DNA-binding domain
PRINTSPR003675.9E-106576IPR001471AP2/ERF domain
PRINTSPR003675.9E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNSSSSSCSD LSFDSDWPPI SFLNAINVEE RKTISSEKLS SENDFSEEIK SEKVQKIPNK  60
EEKHYIGVRK RPWGKFAAEI RDSTRNGIRV WLGTFDTAEE AAMAYDQAAL SMRGPATCLN  120
FPLEIVQESL RGLKCSGKEG SSQVEAIKEK HKKRHSKGKR KQIKEENVLV FEDLGSDLLD  180
ELLSECSTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2963125466ATERF1
3gcc_A6e-2963125466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437637.11e-138PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y96e-48ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3XCK71e-136A0A1S3XCK7_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009764685.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-28ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]