PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437510.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 603aa    MW: 66992.7 Da    PI: 5.8934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.63.2e-842426023374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL    +   + ++ ++pp+  ++ + + ++ a+k+fse+sP+++f ++t
  XP_016437510.1 242 DQIFQASELLLAGQFSNAQMILARLNQQLSPLGKPFKRSAFYFKEALLLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEISPLIQFMNFT 334
                     67899999999************************************998887..7777889***99999************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190
                      Nq Ilea+  ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L+ fA+ +g++fe +v+  ++++  +  
  XP_016437510.1 335 SNQPILEALGDAKQIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 429
                     ***********************************************************************************977765411567 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     l++Lr ++ Ea+a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++++ ++ +++l+al+yy  l+ s++a    + e  +k+
  XP_016437510.1 430 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIDAA-NLTPEIGKKI 517
                     8999************99555444..344....456*********************************************555.34778999** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er ll+++i+n+v  + ++      ++  Wr+ + +aGF+p+++s+ a+ qa+++++++++ g++ve+++ slvl+Wk+++L+s+ aWr
  XP_016437510.1 518 ERSLLQPSIENMVLGRLRS----PDRMPPWRNLFASAGFSPIEFSNMAEIQAECVVKRTQVGGFHVEKRQMSLVLCWKQQELLSILAWR 602
                     **************99988....9999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.488214582IPR005202Transcription factor GRAS
PfamPF035141.1E-81242602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGEKSDLGFG DLDNLLPELA GSDQTLFRCI SGDMEDPSIS LKQLLQGGNE NADLSCGVSV  60
QSSGFEVSAA GSLAHTDNVS FSNSNLLLNA NIEKIGSVIN SDNKQNVNFE HLNVNLLARN  120
LPPALSFQEQ QSEQNSAYVN MLGSLSYDVT QEQPPPKRHN SGTLGSSLSA LLPEVPFFDS  180
SGELLLRKQP LGQTRQQVNF LPFHQFQQKP LIVPKLEAAV GGANGNLMVP CHQQQEQQFI  240
YDQIFQASEL LLAGQFSNAQ MILARLNQQL SPLGKPFKRS AFYFKEALLL PFLLPCTSTS  300
FPPRIPTPFD CVLKMDAYKA FSEISPLIQF MNFTSNQPIL EALGDAKQIH IIDFDIGCGA  360
QWSSFMQELR SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SLTLFANDVG IRFELEVINL  420
DSFDPKTYPL SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE  480
RTELPLKHHL LHALQYYEIL LASIDAANLT PEIGKKIERS LLQPSIENMV LGRLRSPDRM  540
PPWRNLFASA GFSPIEFSNM AEIQAECVVK RTQVGGFHVE KRQMSLVLCW KQQELLSILA  600
WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2623360112378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4819520.0AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437509.10.0PREDICTED: scarecrow-like protein 6 isoform X1
TrEMBLA0A1S3XCF70.0A0A1S3XCF7_TOBAC; scarecrow-like protein 6 isoform X1
STRINGXP_009803484.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-98GRAS family protein