PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016437509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 626aa MW: 69193.1 Da PI: 5.9982 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 274.4 | 3.5e-84 | 265 | 625 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL + + ++ ++pp+ ++ + + ++ a+k+fse+sP+++f ++t XP_016437509.1 265 DQIFQASELLLAGQFSNAQMILARLNQQLSPLGKPFKRSAFYFKEALLLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEISPLIQFMNFT 357 67899999999************************************998887..7777889***99999************************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190 Nq Ilea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ +g++fe +v+ ++++ + XP_016437509.1 358 SNQPILEALGDAKQIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 452 ***********************************************************************************977765411567 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ +++l+al+yy l+ s++a + e +k+ XP_016437509.1 453 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIDAA-NLTPEIGKKI 540 8999************99555444..344....456*********************************************555.34778999** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er ll+++i+n+v + ++ ++ Wr+ + +aGF+p+++s+ a+ qa+++++++++ g++ve+++ slvl+Wk+++L+s+ aWr XP_016437509.1 541 ERSLLQPSIENMVLGRLRS----PDRMPPWRNLFASAGFSPIEFSNMAEIQAECVVKRTQVGGFHVEKRQMSLVLCWKQQELLSILAWR 625 **************99988....9999*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.488 | 237 | 605 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-81 | 265 | 625 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MLVTTSHSPS ASASSSSCSY GGNMGEKSDL GFGDLDNLLP ELAGSDQTLF RCISGDMEDP 60 SISLKQLLQG GNENADLSCG VSVQSSGFEV SAAGSLAHTD NVSFSNSNLL LNANIEKIGS 120 VINSDNKQNV NFEHLNVNLL ARNLPPALSF QEQQSEQNSA YVNMLGSLSY DVTQEQPPPK 180 RHNSGTLGSS LSALLPEVPF FDSSGELLLR KQPLGQTRQQ VNFLPFHQFQ QKPLIVPKLE 240 AAVGGANGNL MVPCHQQQEQ QFIYDQIFQA SELLLAGQFS NAQMILARLN QQLSPLGKPF 300 KRSAFYFKEA LLLPFLLPCT STSFPPRIPT PFDCVLKMDA YKAFSEISPL IQFMNFTSNQ 360 PILEALGDAK QIHIIDFDIG CGAQWSSFMQ ELRSSNRKAT SLKITAFVSP STHHSVEIGI 420 MHESLTLFAN DVGIRFELEV INLDSFDPKT YPLSSLRSSE CEAIAINFPI WSISSCLFAF 480 PSLLHCMKQL SPKVVVSLER GCERTELPLK HHLLHALQYY EILLASIDAA NLTPEIGKKI 540 ERSLLQPSIE NMVLGRLRSP DRMPPWRNLF ASAGFSPIEF SNMAEIQAEC VVKRTQVGGF 600 HVEKRQMSLV LCWKQQELLS ILAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-26 | 256 | 624 | 12 | 378 | Protein SCARECROW |
5b3h_A | 4e-26 | 256 | 624 | 11 | 377 | Protein SCARECROW |
5b3h_D | 4e-26 | 256 | 624 | 11 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF481952 | 0.0 | AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437509.1 | 0.0 | PREDICTED: scarecrow-like protein 6 isoform X1 | ||||
TrEMBL | A0A1S3XCF7 | 0.0 | A0A1S3XCF7_TOBAC; scarecrow-like protein 6 isoform X1 | ||||
STRING | XP_009803484.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6986 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 5e-98 | GRAS family protein |