PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016437508.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 686aa MW: 75335.9 Da PI: 6.4058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016437508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	281.2	3e-86	325	685	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + + ++ ++pp+ ++ + + ++ a+k+fsevsP+++f ++t XP_016437508.1 325 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEVSPLIQFMNFT 417 67899999999***********************************99998..77778899999********************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190 NqaIlea+ ++++HiiDfdi+ G+QW +L+q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ +g++fe +v+ ++++ + XP_016437508.1 418 SNQAILEALGAAKQIHIIDFDIGCGAQWSSLMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 512 *******************************************************************************977765411567 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284 l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ +++l+al+yy l+ s+ +a+ + + +k XP_016437508.1 513 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIdAAN--LTPDVGKK 599 8999********99555444..344....456******************************************5555..4778999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er ll+ +i+n+v + ++ ++ Wr+ + +aGF+pv++s+ ++ qa++l++++++ g++ve+++ slvl+Wk+++L+s+ +Wr XP_016437508.1 600 IERSLLQSSIENMVLGRLRS----PNRIPPWRNLFASAGFSPVAFSNLTEIQAECLVKRTQVGGFHVEKRQTSLVLCWKQQELLSALSWR 685 *************99988....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.867	297	665	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-83	325	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MIVIPQSNNL AGAKGVLGVS VLDARSPSPS ASSSSCSYGG QYAGNNGVPG AGAGKIDGRK 60 EELVTELQPF SFELEPEKFN LGFGDLDNLL PELAGSDQTI FRWISGDMED PSVSLKQLLQ 120 GGNANADLGC GVSVAGSFAC TDNISFSSSD ISLDANIEKI GSVVIDSNNR PNNNFENPNV 180 NLLAKSLPPT LSFHEQQSEE KPQISCPQIM TNQHQFQNSA YVNLFGSSSY NMNQEQPPPK 240 RHNSGILGSS LGFLLPKVPF FNPSGDLLLR KQPLGHMQQQ VNLLPPHQFQ PTSLFVPKLE 300 AAGGDGNGNL MVPRHQQQEQ QFIYDQIFQA SELLLAGHFS NAQMILARLN QQLSPIGKPF 360 KRAAFYFKEA LQLPFLLPCT STSFPPRIPT PFDCVLKMDA YKAFSEVSPL IQFMNFTSNQ 420 AILEALGAAK QIHIIDFDIG CGAQWSSLMQ ELPSSNRKAT SLKITAFVSP STHHSVEIGI 480 MHESLTLFAN DVGIRFELEV INLDSFDPKT YPLSSLRSSE CEAIAINFPI WSISSCLFAF 540 PSLLHCMKQL SPKVVVSLER GCERTELPLK HHLLHALQYY EILLASIDAA NLTPDVGKKI 600 ERSLLQSSIE NMVLGRLRSP NRIPPWRNLF ASAGFSPVAF SNLTEIQAEC LVKRTQVGGF 660 HVEKRQTSLV LCWKQQELLS ALSWRC

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MIVIPQSNNL AGAKGVLGVS VLDARSPSPS ASSSSCSYGG QYAGNNGVPG AGAGKIDGRK  60
EELVTELQPF SFELEPEKFN LGFGDLDNLL PELAGSDQTI FRWISGDMED PSVSLKQLLQ  120
GGNANADLGC GVSVAGSFAC TDNISFSSSD ISLDANIEKI GSVVIDSNNR PNNNFENPNV  180
NLLAKSLPPT LSFHEQQSEE KPQISCPQIM TNQHQFQNSA YVNLFGSSSY NMNQEQPPPK  240
RHNSGILGSS LGFLLPKVPF FNPSGDLLLR KQPLGHMQQQ VNLLPPHQFQ PTSLFVPKLE  300
AAGGDGNGNL MVPRHQQQEQ QFIYDQIFQA SELLLAGHFS NAQMILARLN QQLSPIGKPF  360
KRAAFYFKEA LQLPFLLPCT STSFPPRIPT PFDCVLKMDA YKAFSEVSPL IQFMNFTSNQ  420
AILEALGAAK QIHIIDFDIG CGAQWSSLMQ ELPSSNRKAT SLKITAFVSP STHHSVEIGI  480
MHESLTLFAN DVGIRFELEV INLDSFDPKT YPLSSLRSSE CEAIAINFPI WSISSCLFAF  540
PSLLHCMKQL SPKVVVSLER GCERTELPLK HHLLHALQYY EILLASIDAA NLTPDVGKKI  600
ERSLLQSSIE NMVLGRLRSP NRIPPWRNLF ASAGFSPVAF SNLTEIQAEC LVKRTQVGGF  660
HVEKRQTSLV LCWKQQELLS ALSWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-27	312	684	6	377	Protein SCARECROW
5b3h_D	6e-27	312	684	6	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF481952	0.0	AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437508.1	0.0	PREDICTED: scarecrow-like protein 6 isoform X2
TrEMBL	A0A1S3XCN6	0.0	A0A1S3XCN6_TOBAC; scarecrow-like protein 6 isoform X2
STRING	XP_009803487.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-99	GRAS family protein