PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437506.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 714aa    MW: 78246.1 Da    PI: 6.406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.13.4e-863537133374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+   +   + ++ ++pp+  ++ + + ++ a+k+fsevsP+++f ++t
  XP_016437506.1 353 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEVSPLIQFMNFT 445
                     57899999999*************************************99998..7777889****9999************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dle 190
                      NqaIlea+  ++++HiiDfdi+ G+QW +L+q+L s ++++ sl+iT+++sp+++++ e+  ++e L+ fA+ +g++fe +v+  ++++  +  
  XP_016437506.1 446 SNQAILEALGAAKQIHIIDFDIGCGAQWSSLMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDVGIRFELEVINLDSFDpkTYP 540
                     ***********************************************************************************977765411567 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                     l++Lr ++ Ea+a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++++ ++ +++l+al+yy  l+ s+ +a+   + +  +k
  XP_016437506.1 541 LSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKHHLLHALQYYEILLASIdAAN--LTPDVGKK 627
                     8999************99555444..344....456*********************************************5555..4778999* PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er ll+ +i+n+v  + ++     ++   Wr+ + +aGF+pv++s+ ++ qa++l++++++ g++ve+++ slvl+Wk+++L+s+ +Wr
  XP_016437506.1 628 IERSLLQSSIENMVLGRLRS----PNRIPPWRNLFASAGFSPVAFSNLTEIQAECLVKRTQVGGFHVEKRQTSLVLCWKQQELLSALSWR 713
                     ***************99988....999**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.867325693IPR005202Transcription factor GRAS
PfamPF035141.2E-83353713IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MIVIPQSNNL AGAKGVLGVS GYVPSISSSP EAAICNKGLN FTRNESVSVL DARSPSPSAS  60
SSSCSYGGQY AGNNGVPGAG AGKIDGRKEE LVTELQPFSF ELEPEKFNLG FGDLDNLLPE  120
LAGSDQTIFR WISGDMEDPS VSLKQLLQGG NANADLGCGV SVAGSFACTD NISFSSSDIS  180
LDANIEKIGS VVIDSNNRPN NNFENPNVNL LAKSLPPTLS FHEQQSEEKP QISCPQIMTN  240
QHQFQNSAYV NLFGSSSYNM NQEQPPPKRH NSGILGSSLG FLLPKVPFFN PSGDLLLRKQ  300
PLGHMQQQVN LLPPHQFQPT SLFVPKLEAA GGDGNGNLMV PRHQQQEQQF IYDQIFQASE  360
LLLAGHFSNA QMILARLNQQ LSPIGKPFKR AAFYFKEALQ LPFLLPCTST SFPPRIPTPF  420
DCVLKMDAYK AFSEVSPLIQ FMNFTSNQAI LEALGAAKQI HIIDFDIGCG AQWSSLMQEL  480
PSSNRKATSL KITAFVSPST HHSVEIGIMH ESLTLFANDV GIRFELEVIN LDSFDPKTYP  540
LSSLRSSECE AIAINFPIWS ISSCLFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH  600
LLHALQYYEI LLASIDAANL TPDVGKKIER SLLQSSIENM VLGRLRSPNR IPPWRNLFAS  660
AGFSPVAFSN LTEIQAECLV KRTQVGGFHV EKRQTSLVLC WKQQELLSAL SWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-273407127378Protein SCARECROW
5b3h_A8e-273407126377Protein SCARECROW
5b3h_D8e-273407126377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4819520.0AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437506.10.0PREDICTED: scarecrow-like protein 22 isoform X1
TrEMBLA0A1S3XC590.0A0A1S3XC59_TOBAC; scarecrow-like protein 22 isoform X1
STRINGXP_009803487.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-99GRAS family protein