PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436943.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 891aa MW: 97194.7 Da PI: 6.6453

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	477	497	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ XP_016436943.1 477 YCRHYLK-GRCSEGEKCKFSHD 497 6****.***********7 PP
2	zf-CCCH	21.8	3.3e-07	531	551	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a G+C++G+ C F+H XP_016436943.1 531 PCNNYASIGFCSRGADCLFSH 551 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.525	472	499	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	473	498	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	473	497	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	476	497	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-4	477	497	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.756	501	528	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	501	527	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.26	529	553	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-4	531	552	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	531	551	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.474	531	554	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MENSHIGALN PLQNPFPFPP HRRRPLMSQT YITLLQILSY NCPTTDSTTE IQKPDDNGSK 60 LGKENEVEEL VDHHLIRSDN LLVNGPAHKE SDNLVVQQGS GDGNEGSSRS GYRDFTSAQM 120 EVDLDLSNRT SDAIQGDRGH ARTNDIDDMN RLVDKTRSFN DQMVEEPGNR CSTHESEVKE 180 SDPVGPVELD KELSIDDVCA TIESCFGADT VAELSQPAEV SGEEIPVPMT HLTEEMEHGL 240 RLKEMELETL ISSAGATDLS VHVPMGEEIE KGEVSGDFMV FDESDYDIVN DVRDEKKVEA 300 EKYPADIVDR EDFAFDARDN PPQKRDAYAS SSIDAVDEDY TSLGGKFIRK FGEEPKDNVE 360 KVFCSKDVGT RKVRVYDSIL DSGNVAKQVG GDMKLDHPAG FQFGATSAEK AKENKHLIDA 420 AEDADIGKKK KKGGPLTKEK RAKKKAKERI KRAEKNRKLG VKRLKLPPVV KPKVVAYCRH 480 YLKGRCSEGE KCKFSHDTTP LTKSKPCCHF ARQSCMKGDD CPFDHQLSKY PCNNYASIGF 540 CSRGADCLFS HEITVKMAAV TSPTASNLEL MSPSAPSNSN SLMQINTYGV SHKDVNSSSG 600 SAGFVPGKCT ERTVLEPVQK PAACTPKGVT FLSHGKSLQG DARKHEKAGL SSKADDVGKL 660 SCQMIHNKHE KAGLMKGVSP RTPQGINFLS FGQAPSAEPS GDTYSGLFNM DYGVKKLLPG 720 GMNNSIEAAT CAKRDGSVKD DNQANLSASL WSMNQMSTRT PHASAPRGIS FLSAEKAAQD 780 ISRPNEFNRA SSPIQRRPSA AEKTSDEMPF RQSSSLFPAG QSLNYQSAQK CSMGIASSSK 840 TPFLANTQPS SIQKALQSTL AFAAKFDLGV KFGTSNGSTN ITSSINHSKD R

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MENSHIGALN PLQNPFPFPP HRRRPLMSQT YITLLQILSY NCPTTDSTTE IQKPDDNGSK  60
LGKENEVEEL VDHHLIRSDN LLVNGPAHKE SDNLVVQQGS GDGNEGSSRS GYRDFTSAQM  120
EVDLDLSNRT SDAIQGDRGH ARTNDIDDMN RLVDKTRSFN DQMVEEPGNR CSTHESEVKE  180
SDPVGPVELD KELSIDDVCA TIESCFGADT VAELSQPAEV SGEEIPVPMT HLTEEMEHGL  240
RLKEMELETL ISSAGATDLS VHVPMGEEIE KGEVSGDFMV FDESDYDIVN DVRDEKKVEA  300
EKYPADIVDR EDFAFDARDN PPQKRDAYAS SSIDAVDEDY TSLGGKFIRK FGEEPKDNVE  360
KVFCSKDVGT RKVRVYDSIL DSGNVAKQVG GDMKLDHPAG FQFGATSAEK AKENKHLIDA  420
AEDADIGKKK KKGGPLTKEK RAKKKAKERI KRAEKNRKLG VKRLKLPPVV KPKVVAYCRH  480
YLKGRCSEGE KCKFSHDTTP LTKSKPCCHF ARQSCMKGDD CPFDHQLSKY PCNNYASIGF  540
CSRGADCLFS HEITVKMAAV TSPTASNLEL MSPSAPSNSN SLMQINTYGV SHKDVNSSSG  600
SAGFVPGKCT ERTVLEPVQK PAACTPKGVT FLSHGKSLQG DARKHEKAGL SSKADDVGKL  660
SCQMIHNKHE KAGLMKGVSP RTPQGINFLS FGQAPSAEPS GDTYSGLFNM DYGVKKLLPG  720
GMNNSIEAAT CAKRDGSVKD DNQANLSASL WSMNQMSTRT PHASAPRGIS FLSAEKAAQD  780
ISRPNEFNRA SSPIQRRPSA AEKTSDEMPF RQSSSLFPAG QSLNYQSAQK CSMGIASSSK  840
TPFLANTQPS SIQKALQSTL AFAAKFDLGV KFGTSNGSTN ITSSINHSKD R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	439	447	KRAKKKAKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436938.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
Refseq	XP_016436939.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
Refseq	XP_016436940.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
Refseq	XP_016436942.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
Refseq	XP_016436943.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
Refseq	XP_016436944.1	0.0	PREDICTED: uncharacterized protein LOC107763042 isoform X1
TrEMBL	A0A1S3XAI0	0.0	A0A1S3XAI0_TOBAC; uncharacterized protein LOC107763042 isoform X1
STRING	XP_009802985.1	0.0	(Nicotiana sylvestris)