PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436906.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 408aa MW: 45467.6 Da PI: 6.7555

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_016436906.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-14	142	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MYHHHHQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKVAAGEDR 120 ISENSATCMS NPSIGPQPNK NIQISEAIQI QIEVQRRLHE QLELRIEAQG KYLHAVLEKA 180 QETLGRQDMG TVGLEAAKIQ LSELVSTVSN QCLNPTFSDI QEISGFSSQQ TQTTQLADRS 240 IDSCLTSCEG SLRDNTMHNN QIGLRPFEFT PSIECKDIEN DTRIQQTGLR WCDNLKENRK 300 LFSAIDEGKE KAFTTETNCK NLSMSIGLQD GNLDGSSNHS DGKFNETNTA VRHFHQAANR 360 GDSMQERQKS SQEYKLSYFA PKLDLNIHDE TDAASSCKQF DLNGFSWG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MYHHHHQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKVAAGEDR  120
ISENSATCMS NPSIGPQPNK NIQISEAIQI QIEVQRRLHE QLELRIEAQG KYLHAVLEKA  180
QETLGRQDMG TVGLEAAKIQ LSELVSTVSN QCLNPTFSDI QEISGFSSQQ TQTTQLADRS  240
IDSCLTSCEG SLRDNTMHNN QIGLRPFEFT PSIECKDIEN DTRIQQTGLR WCDNLKENRK  300
LFSAIDEGKE KAFTTETNCK NLSMSIGLQD GNLDGSSNHS DGKFNETNTA VRHFHQAANR  360
GDSMQERQKS SQEYKLSYFA PKLDLNIHDE TDAASSCKQF DLNGFSWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-83	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436906.1	0.0	PREDICTED: uncharacterized protein LOC107763009 isoform X2
Swissprot	Q9SQQ9	1e-124	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S3XAG9	0.0	A0A1S3XAG9_TOBAC; uncharacterized protein LOC107763009 isoform X2
STRING	XP_009630167.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-117	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]