PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016436663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 1010aa MW: 110323 Da PI: 6.1224 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.3e-29 | 565 | 616 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016436663.1 565 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 616 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 555 | 636 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.4E-26 | 568 | 616 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.14E-20 | 914 | 1000 | No hit | No description |
PROSITE profile | PS51745 | 19.935 | 915 | 997 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.1E-23 | 915 | 997 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.7E-22 | 916 | 996 | No hit | No description |
Pfam | PF00564 | 2.5E-16 | 916 | 996 | IPR000270 | PB1 domain |
CDD | cd06407 | 9.68E-32 | 916 | 996 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1010 aa Download sequence Send to blast |
MLPGRLIRFS LQQRLFRLIL RRHFCLVLLF GDFPMISRKN LPEIHSPVLS VSPVTLDLVL 60 LVYTDDPEAT TETVSVNADK GRLPSPVLEL APRDYPNGSC IIKERMTQAL RYFKESTGER 120 VLAQVWAPVK DAGRYVLTTS GQPFVLDPDC NGLHQYRTVS LMYMFAADGE TGGVLGLPGR 180 VFRLKLPEWT PNVQYYSSKE FPRLDHALHY NVRGTLALPV FEPSGQSCLG VLELIMTSQK 240 INYAAEVDKV CKALETVNLK SSEILDHPNT QVYVMGYMNQ ICNEGRQNAL VEILEILTAV 300 CETYQLPLAQ TWVPCRHRSV LADGGGLKKS CSSFDGSCMG QICMSTTDVA FYVVDAHMWG 360 FREACAEHHL QKGQGVAGRA YASQKSCFCE DITQFCKTEY PLVHYARLFG LTSCFAICLR 420 SSHTGNDDYI LEFFLPPNSG DYSDQQALLN SLLLTMKQHF RSLSIASGGE LEHDWSSVEI 480 IKASIEEKID AKPESVSAPK SLPQPTRLPN GWTNLDPLGE QQFSVESDVA KGAGSKCGTG 540 EAPNHVSPSD NKPTGKKSER KRGKAEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC 600 RQHGISRWPS RKINKVNRSL SKLKCVIESV QGTEGAFTLT SLAPNSFPAA VGSISWPACA 660 SGSNLPSSPL SKPSVFPEEK NEFSNHGTPE SHEEAEPSNQ MLGGRVTRKE EFTPQNGFLY 720 AEGSHKSRTG SVSREESAGT PTSQGSCQGS PSAGNEFSPQ NDLVNSPARE ACMKASAGTP 780 TSQGSCQGSP SAGNEFSPQN DLVNSPAHEA CMKVGGSLEA AHQTTTENNL AAAFLIPRPF 840 IPERAQEPFG GMLVEDAGSS HDLRNLCSAG EAQVDERVPE YSLPNPPFSD AIAKDPVYVP 900 ADTTPQYSAW PEVTFVTIKA AYREDIIRFR LCLNSGIVKL KEEVAKRLKL ELGTFDIKYL 960 DDDLEVVSIS CDADLQECVD ISLSSGSSIV RLLVHDIMSN LGSSCESSGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436663.1 | 0.0 | PREDICTED: protein NLP6-like isoform X5 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A1S3XA72 | 0.0 | A0A1S3XA72_TOBAC; protein NLP6-like isoform X5 | ||||
STRING | XP_009599820.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |