PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016436662.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 1016aa MW: 110872 Da PI: 5.4293 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.3e-29 | 610 | 661 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016436662.1 610 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 661 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 600 | 681 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.4E-26 | 613 | 661 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.14E-20 | 920 | 1006 | No hit | No description |
PROSITE profile | PS51745 | 19.935 | 921 | 1003 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.1E-23 | 921 | 1003 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.8E-22 | 922 | 1002 | No hit | No description |
CDD | cd06407 | 9.80E-32 | 922 | 1002 | No hit | No description |
Pfam | PF00564 | 2.6E-16 | 922 | 1002 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1016 aa Download sequence Send to blast |
MSEPEEKITS KNPRPKSKEF SSPPPQQPPH TAMEKESTTM MMDLDIDASW SFDQIFAAAA 60 AVSSNPTSPF LPCSPLWGFS DDIEEKPAGN SFSGALRFSG HPRFGATYTD DPEATTETVS 120 VNADKGRLPS PVLELAPRDY PNGSCIIKER MTQALRYFKE STGERVLAQV WAPVKDAGRY 180 VLTTSGQPFV LDPDCNGLHQ YRTVSLMYMF AADGETGGVL GLPGRVFRLK LPEWTPNVQY 240 YSSKEFPRLD HALHYNVRGT LALPVFEPSG QSCLGVLELI MTSQKINYAA EVDKVCKALE 300 TVNLKSSEIL DHPNTQVYVM GYMNQICNEG RQNALVEILE ILTAVCETYQ LPLAQTWVPC 360 RHRSVLADGG GLKKSCSSFD GSCMGQICMS TTDVAFYVVD AHMWGFREAC AEHHLQKGQG 420 VAGRAYASQK SCFCEDITQF CKTEYPLVHY ARLFGLTSCF AICLRSSHTG NDDYILEFFL 480 PPNSGDYSDQ QALLNSLLLT MKQHFRSLSI ASGGELEHDW SSVEIIKASI EEKIDAKPES 540 VSAPKSLPQP TRLPNGWTNL DPLGEQQFSV ESDVAKGAGS KCGTGEAPNH VSPSDNKPTG 600 KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKINK 660 VNRSLSKLKC VIESVQGTEG AFTLTSLAPN SFPAAVGSIS WPACASGSNL PSSPLSKPSV 720 FPEEKNEFSN HGTPESHEEA EPSNQMLGGR VTRKEEFTPQ NGFLYAEGSH KSRTGSVSRE 780 ESAGTPTSQG SCQGSPSAGN EFSPQNDLVN SPAREACMKA GGSLEAAHQT TTENNLAAAF 840 LIPRPFIPER AQEPFGGMLV EDAGSSHDLR NLCSAGEAQV DERVPEYSLP NPPFSDAIAK 900 DPVYVPADTT PQYSAWPEVT FVTIKAAYRE DIIRFRLCLN SGIVKLKEEV AKRLKLELGT 960 FDIKYLDDDL EVVSISCDAD LQECVDISLS SGSSIVRLLV HDIMSNLGSS CESSGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436662.1 | 0.0 | PREDICTED: protein NLP6-like isoform X4 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A1S3X9S6 | 0.0 | A0A1S3X9S6_TOBAC; protein NLP6-like isoform X4 | ||||
STRING | XP_009599820.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |