PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436629.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 88aa    MW: 10126.9 Da    PI: 10.3568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ ++ + G g+W++ +++  + R++k+c++rw +yl
   XP_016436629.1 14 KGPWTPEEDRKLLSCIVENGCGSWRALPAKADLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129422.006965IPR017930Myb domain
SMARTSM007172.2E-91363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-211588IPR009057Homeodomain-like
CDDcd001672.56E-81661No hitNo description
Gene3DG3DSA:1.10.10.604.4E-86588IPR009057Homeodomain-like
PROSITE profilePS512947.3776688IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MGRSKCCDKQ GLKKGPWTPE EDRKLLSCIV ENGCGSWRAL PAKADLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEERTIIQ LHALLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-161288580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436629.19e-59PREDICTED: myb-related protein Myb4-like
SwissprotQ9LE633e-48MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3X9Z22e-57A0A1S3X9Z2_TOBAC; myb-related protein Myb4-like
TrEMBLA0A1S4BPN45e-55A0A1S4BPN4_TOBAC; protein ODORANT1-like
STRINGXP_009593708.18e-56(Nicotiana tomentosiformis)
STRINGXP_009597077.13e-57(Nicotiana tomentosiformis)
STRINGXP_009621431.17e-56(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.22e-50myb domain protein 16