PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016436623.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 412aa    MW: 47172 Da    PI: 10.4592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016436623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06184204526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr+f + G C++G+ C+F H+
  XP_016436623.1 184 VCRNFTA-GNCRRGSDCRFFHP 204
                     6******.***********998 PP
2zf-CCCH20.67.7e-07266289226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +t +Cr+f + G C+ G++C+F+H+
  XP_016436623.1 266 GTIICRDFVK-GNCRWGASCRFSHD 289
                     5779******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15179206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5180204IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5181205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5182203IPR000571Zinc finger, CCCH-type
PfamPF146080.13185204No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-6259289IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5264290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5264289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713264291IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4267289IPR000571Zinc finger, CCCH-type
SMARTSM003560.6315340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.098315341IPR000571Zinc finger, CCCH-type
PfamPF146080.0055321338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SSWSCGDNVT GTEELRKENY  60
HYKSMSPAFD RWGRRSSSHS PNNGRTQSRR YPERARSRSR SRSRARGEGR SRSRSRGRDR  120
FRGWTRSRSR SKSRDRDRDQ DRDRDRDRGS MRVQNRSRSP LHNSKRDPYA SGDRRSGPRM  180
SSQVCRNFTA GNCRRGSDCR FFHPDAINHR DGGHSEGNLV ERLGSRPERG HVSRYADSEG  240
PGYQSRDRLP DMHHLEDEMH RNRNRGTIIC RDFVKGNCRW GASCRFSHDG ASGDSYDKGT  300
RSASIDHGQD NQASRTGKSL CKYFAAGKCY KDNCKFSHDA TSRNHEIRPS DDIGGHRLDD  360
KNNWLKGPKW DDEGRPSDLV KASGWDEGRP SDHVKASGWD EGRPSDHVKS SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RSRSRSRGR
2111121RSRSRGRDRFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436623.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like, partial
TrEMBLA0A1S3XA330.0A0A1S3XA33_TOBAC; zinc finger CCCH domain-containing protein 55-like
STRINGXP_009765123.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029