PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436563.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 193aa MW: 22178.9 Da PI: 6.6257

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3.1e-31	27	79	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH+ F+eave+LGGs+kAtPk+i ++m vkgL ++hvkSHLQ+YR XP_016436563.1 27 PRLRWTPELHQLFIEAVEHLGGSDKATPKRIQQMMAVKGLKISHVKSHLQMYR 79 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.866	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-28	24	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	27	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-16	27	83	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-9	28	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MMEFSIMKSS SSQKISRVRQ YKKSSVPRLR WTPELHQLFI EAVEHLGGSD KATPKRIQQM 60 MAVKGLKISH VKSHLQMYRN LKERASITIV RSSSPLHVSE TLREPGSQLS YKLGGVNEYT 120 DQIAENVYCY DYQEAQGSLS SGMTKEEEEE GECEREINFW PNLDDYQHSQ SENSTKDNSH 180 INLDLSISSC FYC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	28	84	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	1e-31	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626755.1	1e-143	PREDICTED: probable transcription factor KAN4
Refseq	XP_016436563.1	1e-143	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A1S3X9X5	1e-142	A0A1S3X9X5_TOBAC; probable transcription factor KAN4
STRING	XP_009626755.1	1e-143	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-26	G2-like family protein