PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436509.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 192aa MW: 22075.5 Da PI: 7.1953

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.5	6.3e-12	15	58	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ++i++k+ + s+ ++ KKA+E+S+LC++e+a+iifs g XP_016436509.1 15 EFIKDKRAEEAAISNIQKAFCKKAKEISTLCGIEIAIIIFSIVG 58 5899999999******************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.442	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.004	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-5	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-12	9	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-9	16	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-5	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-5	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEKKSSQIRK NIEREFIKDK RAEEAAISNI QKAFCKKAKE ISTLCGIEIA IIIFSIVGQP 60 FLFGIPNVES VVRRFLKAKQ PIAALSSGYI SYQKTSGRKR KEEMYKKKKK VEENKDKEEA 120 LESIFTHCPS EDFNLTDLEM FEKLDQKIEK LLDYLIEEIA QLQFVIDAED PNFAPEMNVT 180 SSSTLPSNWL SL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620978.1	1e-137	PREDICTED: agamous-like MADS-box protein AGL29
Refseq	XP_016436509.1	1e-137	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3X9M3	1e-136	A0A1S3X9M3_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009620978.1	1e-137	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	3e-14	AGAMOUS-like 29