PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435910.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 279aa    MW: 30974 Da    PI: 7.8029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-18103152255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr +  +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_016435910.1 103 TFRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 152
                     59****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-35103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31103161IPR001471AP2/ERF domain
PROSITE profilePS5103223.182103160IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21103161IPR016177DNA-binding domain
PRINTSPR003674.6E-10104115IPR001471AP2/ERF domain
CDDcd000183.09E-32104162No hitNo description
PfamPF008471.5E-12104152IPR001471AP2/ERF domain
PRINTSPR003674.6E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEDHHLHLEF SIYSSSSSSS SSITSSSFAN SSNGLNSPST TTSSTSSSSF HENINAKTPS  60
NGYTCKSKKS SKIVQDFTKN GNGHGNGENK KKRKNQGDEK HPTFRGVRKR NWGKWVSEIR  120
QPRKKSRIWL GTYPTAEMAA RAHDVAALAI KGNSAYLNFP HLADQLPRPA STSPKDIQAA  180
AANAATSTFL EKNSVRDEVE SQIKLHSSHS SMNLALENTQ ELLNSPSIDH DDTFFDLPDL  240
TIDQVDQNDR YQYPISTWQL AGADSGIFRL EEPFLWECY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-181001611173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335213e-92AC233521.1 Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH165C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435910.10.0PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ76e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S3X7B80.0A0A1S3X7B8_TOBAC; ethylene-responsive transcription factor ERF039-like
STRINGXP_009771308.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]