PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435858.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 826aa    MW: 91365.4 Da    PI: 6.4792
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.2e-24129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_016435858.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WNEN 220
                     99*****************************97677775.9************************************************..7888 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_016435858.1 221 NQLLLGIRRA 230
                     889****997 PP
2Auxin_resp1218.7e-40255338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_016435858.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-44122244IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-23128229No hitNo description
PfamPF023629.8E-23129230IPR003340B3 DNA binding domain
SMARTSM010194.3E-25129231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042129231IPR003340B3 DNA binding domain
PfamPF065071.0E-34255338IPR010525Auxin response factor
SuperFamilySSF542772.88E-5754826No hitNo description
PROSITE profilePS5174523.473758826IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MRVSSAGFNP QPEEAGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK  60
EVDAHIPNYP GLPPQLICQL HNLTMHADVE TDEVYAQMTL QPLSAQEQKD VCLLPAELGI  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPCQELI AKDLHGNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DAVIFIWNEN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYAKAVY HTRISVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FSLRLKRPWP SGLPSLPGFP NGDMTMNSPL SWLRGDIGDQ GIQSLNFQGY  420
GVTPFMQPRI DASMLGLQPD ILQTMAALDP SKLANQSFMQ FQQSIPGGSA SLSHSQILQP  480
SHSQQNLLHG FSENQLISQA QMLQQQLQRR QNYNDQQQLL QPQLQQHQEV NSSQFQHQQQ  540
TKAMSSLSQM TSAAQPQLSH LRVLSSTGSP QTFSDILGNH VNASSNSTMQ SLLSSFSHDG  600
ASAVLNMHEA HPLVSSSSSS KRIALESQLP SRVTPFAVPQ PEDVISHNTK VSDLSSLLPP  660
FPGRESFSDY RGVEDSQNNA LYGFNTDSLN ILPNGMSNMK DSSGDNGSLS IPYATSTFTN  720
TVGNEYPINS DMTTSSCVDE SGFLQSSENG DQGNPTNRTF VKVHKSGSFG RSLDISKFSS  780
YHELRSELAH MFGLEGLLED PERSGWQLVF VDRENDVLLL GDDPWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8591560.0GQ859156.1 Nicotiana benthamiana ARF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435858.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3X7Y40.0A0A1S3X7Y4_TOBAC; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]