PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435660.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 721aa    MW: 81209.2 Da    PI: 6.6483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-182877756
                    --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ eq+++Le++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  XP_016435660.1 28 HSVEQIQQLETYFKECPHPDENQRRKLSREIGLDPKQIKFWFQNKRTQTK 77
                    688*******************************************9987 PP
2START110.33e-352424586205
                     HHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   6 aaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     a++e v + + +ep W ks              +++ k+ ++ +        ++e +++sgvv+m++ +l +++ld   ++ ++++    ka t+
  XP_016435660.1 242 ATDEIVELLQMNEPIWIKSQidgryfiY----RDSYEKIYPKPNqpykssaARIESSKESGVVTMTAIELIQIFLDPV-RYMNMFPtivtKARTI 331
                     778999999***********87755552....33333333222245667888**************************.66666666666***** PP

                     EEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  83 evissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ev+++    g +qlm+ +l  lsplv  Rdf f+R++rql   +w+ vdvS d+ ++ + s +     ++pSg++i++++ng+s vtw+ehv+++
  XP_016435660.1 332 EVVDTEnfgGSVQLMYEKLHILSPLVGaRDFFFIRCCRQLDPTTWTMVDVSYDNLREIQ-SGGPSQTWKFPSGCVIQDLGNGKSMVTWLEHVHVD 425
                     *****9999************************************************99.788888889************************** PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqce 205
                     +++    l+r lv  ++ +gak+w   lqr  e
  XP_016435660.1 426 DKTHtNRLYRDLVCGRQTFGAKRWIISLQRMSE 458
                     *998799******************99999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17973IPR009057Homeodomain-like
SuperFamilySSF466892.21E-161278IPR009057Homeodomain-like
SMARTSM003891.2E-151983IPR001356Homeobox domain
PROSITE profilePS5007116.0661979IPR001356Homeobox domain
CDDcd000861.67E-152777No hitNo description
PfamPF000468.2E-162877IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084832.175228462IPR002913START domain
CDDcd088752.93E-80232458No hitNo description
SuperFamilySSF559611.79E-24236460No hitNo description
SMARTSM002342.8E-16237459IPR002913START domain
PfamPF018523.2E-30241458IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-6291422IPR023393START-like domain
SuperFamilySSF559617.28E-12479676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MADSGNEQIG ESSSSRKRSR RQKLCNRHSV EQIQQLETYF KECPHPDENQ RRKLSREIGL  60
DPKQIKFWFQ NKRTQTKALS ERADNNILRT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERKRNLEK MKMANQRLRD EHERISNLIS SFVGRSFAMT SQLAPQNTVG SLSSSSDESL  180
VSQNIVGSPI ENQLNNVRGN STANIPPRPL PSPPPPPSII QENEEIRVDR EKSLIFGSVI  240
SATDEIVELL QMNEPIWIKS QIDGRYFIYR DSYEKIYPKP NQPYKSSAAR IESSKESGVV  300
TMTAIELIQI FLDPVRYMNM FPTIVTKART IEVVDTENFG GSVQLMYEKL HILSPLVGAR  360
DFFFIRCCRQ LDPTTWTMVD VSYDNLREIQ SGGPSQTWKF PSGCVIQDLG NGKSMVTWLE  420
HVHVDDKTHT NRLYRDLVCG RQTFGAKRWI ISLQRMSERH NFAMGANNHD LEGVIGALEG  480
KQNVMQISQR MVKSFCEILS MGDRLDFPTS SEMTNSGVRV SFRKNEDISQ PKGLIVTAAT  540
SLWLPLSFDT VFNFFKDDKT RPQWDVLTNG NAVGELAQIP TGFFPGNCIS IIQPYVPKEN  600
NMLLLQETNI DPMGAFIIYA PIDLPTVTSI INGADTTQIP ILPSGFIISP DGRLAADRDS  660
NGISQTGSLL TVAFQILVSA NNNNNNNNLI SKQENMEAVA NVHTLLSSTV QKIKVALDCA  720
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435660.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1S3X6P60.0A0A1S3X6P6_TOBAC; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11