PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435583.1
Common NameAG1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27514.1 Da    PI: 9.9775
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_016435583.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP

2K-box110.61.7e-3693188499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L  Lsl++L++Leq++ek+++kiRskKnell+++ie++qk+e +l+++n++Lr+k 
  XP_016435583.1  93 SNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKQ 187
                     4444599*************************************************************************************997 PP

           K-box  99 e 99 
                     +
  XP_016435583.1 188 Q 188
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691777IPR002100Transcription factor, MADS-box
CDDcd002651.52E-451894No hitNo description
SuperFamilySSF554553.01E-331890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-331939IPR002100Transcription factor, MADS-box
PfamPF003198.7E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.1E-26101186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.351103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSISE ANAQYYQQEA SKLRAQIGNL  120
QNQNRNMLGE SLAALSLRDL KNLEQKIEKG ISKIRSKKNE LLFAEIEYMQ KREIDLHNNN  180
QYLRAKQQQQ QMNLMPGSSS YELVPPPQQF DTRNYLQVNG LQTNNHYTRQ DQPSLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q1e-201785169Myocyte-specific enhancer factor 2B
1tqe_R1e-201785169Myocyte-specific enhancer factor 2B
1tqe_S1e-201785169Myocyte-specific enhancer factor 2B
5f28_A2e-201785169MEF2C
5f28_B2e-201785169MEF2C
5f28_C2e-201785169MEF2C
5f28_D2e-201785169MEF2C
6byy_A2e-201785169MEF2 CHIMERA
6byy_B2e-201785169MEF2 CHIMERA
6byy_C2e-201785169MEF2 CHIMERA
6byy_D2e-201785169MEF2 CHIMERA
6c9l_A1e-201785169Myocyte-specific enhancer factor 2B
6c9l_B1e-201785169Myocyte-specific enhancer factor 2B
6c9l_C1e-201785169Myocyte-specific enhancer factor 2B
6c9l_D1e-201785169Myocyte-specific enhancer factor 2B
6c9l_E1e-201785169Myocyte-specific enhancer factor 2B
6c9l_F1e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOBNAG1A0.0L23925.1 Nicotiana tabacum NAG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435583.11e-175PREDICTED: floral homeotic protein AGAMOUS-like isoform X3
SwissprotQ435851e-168AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3X7701e-173A0A1S3X770_TOBAC; floral homeotic protein AGAMOUS-like isoform X3
STRINGXP_009802759.11e-165(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Kempin SA,Mandel MA,Yanofsky MF
    Conversion of perianth into reproductive organs by ectopic expression of the tobacco floral homeotic gene NAG1.
    Plant Physiol., 1993. 103(4): p. 1041-6
    [PMID:7507255]
  2. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]