PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016435582.1
Common NameAG1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28541.2 Da    PI: 9.8854
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016435582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_016435582.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box1157.2e-38931894100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L  Lsl++L++Leq++ek+++kiRskKnell+++ie++qk+e +l+++n++Lr+k+
  XP_016435582.1  93 SNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKI 187
                     4444599***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_016435582.1 188 AE 189
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691777IPR002100Transcription factor, MADS-box
CDDcd002652.77E-451894No hitNo description
SuperFamilySSF554553.27E-331890IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.0E-27101187IPR002487Transcription factor, K-box
PROSITE profilePS5129715.263103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSISE ANAQYYQQEA SKLRAQIGNL  120
QNQNRNMLGE SLAALSLRDL KNLEQKIEKG ISKIRSKKNE LLFAEIEYMQ KREIDLHNNN  180
QYLRAKIAET ERAQQQQQQQ MNLMPGSSSY ELVPPPQQFD TRNYLQVNGL QTNNHYTRQD  240
QPSLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q1e-201785169Myocyte-specific enhancer factor 2B
1tqe_R1e-201785169Myocyte-specific enhancer factor 2B
1tqe_S1e-201785169Myocyte-specific enhancer factor 2B
5f28_A1e-201785169MEF2C
5f28_B1e-201785169MEF2C
5f28_C1e-201785169MEF2C
5f28_D1e-201785169MEF2C
6c9l_A1e-201785169Myocyte-specific enhancer factor 2B
6c9l_B1e-201785169Myocyte-specific enhancer factor 2B
6c9l_C1e-201785169Myocyte-specific enhancer factor 2B
6c9l_D1e-201785169Myocyte-specific enhancer factor 2B
6c9l_E1e-201785169Myocyte-specific enhancer factor 2B
6c9l_F1e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOBNAG1A0.0L23925.1 Nicotiana tabacum NAG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435581.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_016435582.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ435851e-174AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3X6V71e-180A0A1S3X6V7_TOBAC; floral homeotic protein AGAMOUS-like isoform X1
STRINGXP_009802759.11e-172(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-124MIKC_MADS family protein
Publications ? help Back to Top
  1. Kempin SA,Mandel MA,Yanofsky MF
    Conversion of perianth into reproductive organs by ectopic expression of the tobacco floral homeotic gene NAG1.
    Plant Physiol., 1993. 103(4): p. 1041-6
    [PMID:7507255]
  2. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]