PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016435146.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 404aa MW: 45271 Da PI: 5.7448

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016435146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49	1.2e-15	217	260	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA++Lgv+ ++LKriCR yGI RWP XP_016435146.1 217 HNINLKKIEDRSSMTQDAAANDLGVGKSTLKRICRLYGITRWPP 260 79*****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.707	203	288	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-12	218	261	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-13	319	401	No hit	No description
SMART	SM00666	1.7E-11	321	403	IPR000270	PB1 domain
PROSITE profile	PS51745	18.034	321	403	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-14	321	402	No hit	No description
Pfam	PF00564	2.0E-12	325	402	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEYRLVTCSR EAGLTGCFAI CLSALGNDDN IYILEFFLPP NELLHRNLQD FLKLVLDTAK 60 QQLQHVKVAV GHDFGEMLPV EVIKISSDDE LDSFDICQTT KELHNVEPLP NGGELMLLDT 120 PNQQSFSSET NQQLSLDIDE INAERDSIAV SEEQCNSAGS STSAKTSQNK ERKLQLDLST 180 RQAKQGANAG NKRKKGKRIF TSESEIQKER ERIEQDHNIN LKKIEDRSSM TQDAAANDLG 240 VGKSTLKRIC RLYGITRWPP KNKEKKTKCS HSRKMKSILP AEEDVNARTK FQQSSDSPNK 300 EDTINGAKVG AHVTEILDGT AVITKVNYGD RMLKLKLTSS SKMKDLEEEV VKRVESSIES 360 FDFTYVDKEG DTILIKCDED LTECFLHSRS SESATVKMSI TPKS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEYRLVTCSR EAGLTGCFAI CLSALGNDDN IYILEFFLPP NELLHRNLQD FLKLVLDTAK  60
QQLQHVKVAV GHDFGEMLPV EVIKISSDDE LDSFDICQTT KELHNVEPLP NGGELMLLDT  120
PNQQSFSSET NQQLSLDIDE INAERDSIAV SEEQCNSAGS STSAKTSQNK ERKLQLDLST  180
RQAKQGANAG NKRKKGKRIF TSESEIQKER ERIEQDHNIN LKKIEDRSSM TQDAAANDLG  240
VGKSTLKRIC RLYGITRWPP KNKEKKTKCS HSRKMKSILP AEEDVNARTK FQQSSDSPNK  300
EDTINGAKVG AHVTEILDGT AVITKVNYGD RMLKLKLTSS SKMKDLEEEV VKRVESSIES  360
FDFTYVDKEG DTILIKCDED LTECFLHSRS SESATVKMSI TPKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016435146.1	0.0	PREDICTED: protein NLP3-like
TrEMBL	A0A1S3X5M7	0.0	A0A1S3X5M7_TOBAC; protein NLP3-like
STRING	XP_009766016.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	8e-15	Nin-like family protein