PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016435041.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 185aa MW: 20515.2 Da PI: 5.5141

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016435041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.7e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_016435041.1 8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVDKRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 102 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_016435041.1 103 LAQAE 107 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.804	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MGAAGNSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFAIV HKVFGASNIS KMLQELPVDK 60 RADAVSSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LALAQAEILC IQMPSSQDHQ 120 PPNYLLPMSP PIHELVAADD EKSFLNLSHY LNNFESSSSH TCNSDISQEG VFLWTGQYDG 180 SLEQW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604707.1	1e-137	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_016435041.1	1e-137	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	6e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3X5C4	1e-136	A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRING	XP_009604706.1	1e-135	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-66	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]