PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434962.1
Common NameAP1, NtMADS5
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28143 Da    PI: 8.6862
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss
  XP_016434962.1 10 RIENKINRQVTFSKRRGGLAKKAHEISVLCDAEVALIVFSHKGKIFEYSS 59
                    8***********************************************96 PP
2K-box106.92.3e-35841768100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + e++ +e+++ e+akLk++i+ Lqr+++h++GedL+sL+lk+Lq+LeqqL++slk iRs+Kn+l++e+i+ lqkkek++qeen++L+kk++e
  XP_016434962.1  84 NSESSVQENWSLEYAKLKAKIDLLQRNHKHYMGEDLDSLNLKDLQNLEQQLDTSLKLIRSRKNQLMHESISMLQKKEKAIQEENNMLSKKIKE 176
                     35778899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-34288IPR002100Transcription factor, MADS-box
CDDcd002653.17E-40276No hitNo description
PRINTSPR004043.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-3184174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.73290180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLAK KAHEISVLCD AEVALIVFSH KGKIFEYSSD  60
SCMEQILERY ERYSYAERRL LSSNSESSVQ ENWSLEYAKL KAKIDLLQRN HKHYMGEDLD  120
SLNLKDLQNL EQQLDTSLKL IRSRKNQLMH ESISMLQKKE KAIQEENNML SKKIKEKDKT  180
VGKQAEWHQQ NQVPNSASFL LQPHPCLNIG GNYQEEAEEA RRNELDLNLD SLYPCHMGCF  240
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-21174173MEF2 CHIMERA
6byy_B3e-21174173MEF2 CHIMERA
6byy_C3e-21174173MEF2 CHIMERA
6byy_D3e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869390.0JQ686939.1 Nicotiana tabacum cultivar SR1 apetala 1 protein (AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311638.11e-180truncated transcription factor CAULIFLOWER A-like
RefseqXP_016434962.11e-180PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-130AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ9XHR81e-179Q9XHR8_TOBAC; Apetala 1 protein
STRINGXP_009778843.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]