PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016434941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 420aa MW: 47672.2 Da PI: 4.7998 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.3 | 6.7e-08 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v XP_016434941.1 17 ARACDCCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 67.5 | 3.6e-23 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re++++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_016434941.1 362 REERVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRLKGRFVKRT 405 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.2E-9 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.566 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.22E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 15.924 | 362 | 404 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.2E-18 | 362 | 404 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MMTSESKTAN AIGGKTARAC DCCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV 60 RLETSSNKST DTKFVDQTVS QPSWHQGFTR KARTPRNGKN KSTQIGQRKK DEENMVPEMG 120 SEENSPDENE FENEEQLLYR VPVFDPFEAE LCCTVPNEVV DETTTINDLD ILLNSEDVCD 180 DLGIPEFLSS EIELAEFAAD VESLLGEEFR VVAEEEEQSR LINGSVEDNK AIKIEVEDEE 240 MRAVVACHLD PELDMAREAL NWDFEYEETV EQKVNMTAAT EFVPSAECGG SKADAKRRLL 300 LRLNYEAVIS AWPNQSSPWT NGIRPHFNPD DCWPDFLETC IGEGGVHQPY GGGKVRGGDG 360 GREERVSRYR EKRRTRLFSK KIRYQVRKLN AEKRPRLKGR FVKRTTSFSP PGFPYLMNKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 388 | RRTRLFSKKIRYQVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016434941.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A1S3X519 | 0.0 | A0A1S3X519_TOBAC; zinc finger protein CONSTANS-LIKE 16-like | ||||
STRING | XP_009603861.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-72 | B-box type zinc finger protein with CCT domain |