PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016434796.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 492aa MW: 53659.9 Da PI: 6.4256

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016434796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	148	208	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016434796.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSV 208 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	145	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	150	206	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	152	206	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	154	190	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MRQVKDPEIK LFGKKIALPE NGKILSVIVS GEDSGVEKTS GAKEISSGWD RDPCLVDKEA 60 SSPDESDDGS EYENEKTDKD QVTRELTEDI SEEKDQDQVM KESENPKSPS ESENKPKTPP 120 IDDESPTVKS FKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 SCQRYWTAGG TMRNVPVGAG RRKNKNSVSH CHHVMISEAL QAARIDPSNG FHHPTLKPNG 240 TVLSFGPDLP LCDSMASVIN LAEKKTPNGI RNGYYKPEHK NSSCLGGENG DDCSSGSSVT 300 TNSMAGVKNR PPEAVMQTMN GFPSPVPCLP GVPWPFPYAA APFPSMNPAV FPIPFCPPPY 360 WNCNIPGPWS IPWLAPPSPT ANQNGSGSAP NSPLGKHSRD GDLLRPNNPE GQKNSEGSVL 420 VPKTLRIDDP DEAAKSSIWS TLGINYDSVS RGGLFKGFQP KSSEKDHPAT TSPVLQANPV 480 AFSRSLSFQE RA

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MRQVKDPEIK LFGKKIALPE NGKILSVIVS GEDSGVEKTS GAKEISSGWD RDPCLVDKEA  60
SSPDESDDGS EYENEKTDKD QVTRELTEDI SEEKDQDQVM KESENPKSPS ESENKPKTPP  120
IDDESPTVKS FKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK  180
SCQRYWTAGG TMRNVPVGAG RRKNKNSVSH CHHVMISEAL QAARIDPSNG FHHPTLKPNG  240
TVLSFGPDLP LCDSMASVIN LAEKKTPNGI RNGYYKPEHK NSSCLGGENG DDCSSGSSVT  300
TNSMAGVKNR PPEAVMQTMN GFPSPVPCLP GVPWPFPYAA APFPSMNPAV FPIPFCPPPY  360
WNCNIPGPWS IPWLAPPSPT ANQNGSGSAP NSPLGKHSRD GDLLRPNNPE GQKNSEGSVL  420
VPKTLRIDDP DEAAKSSIWS TLGINYDSVS RGGLFKGFQP KSSEKDHPAT TSPVLQANPV  480
AFSRSLSFQE RA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434796.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1S3X4P4	0.0	A0A1S3X4P4_TOBAC; cyclic dof factor 1-like
STRING	XP_009771503.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-93	cycling DOF factor 3