PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016434468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 261aa MW: 30051.9 Da PI: 5.9865 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifs++gkl+eyss XP_016434468.1 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 65.3 | 2.2e-22 | 82 | 167 | 11 | 96 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + + +l+ e++k+k+ + nLq ++ +++G+dL+s +++eL++Le+qLe +++k+R++K+el+l+q+e+l++ ek+l+++n+++ + XP_016434468.1 82 QDNRVELYDEITKMKRDTLNLQLSLQKYKGDDLSSAQYEELNELEKQLEFAVNKVRARKHELMLQQMENLRRTEKMLEKDNQEMYQ 167 44566899*************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.20E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.68 | 85 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-20 | 85 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYSSQ 60 PHSMSEIISR YLQTTGASIP VQDNRVELYD EITKMKRDTL NLQLSLQKYK GDDLSSAQYE 120 ELNELEKQLE FAVNKVRARK HELMLQQMEN LRRTEKMLEK DNQEMYQWLM SNQMYKQQSA 180 GMEHNDDDQN EEAITELNLM GEQPLLSQFS FFGEEQVQPS SSNVLQLAAA STSTSAYRLQ 240 SSHPNLQDSD LPGCNYAHLK D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 6e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 6e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 6e-19 | 1 | 71 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212438 | 1e-54 | AC212438.2 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence. | |||
GenBank | HG975450 | 1e-54 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. | |||
GenBank | HG975523 | 1e-54 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785850.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Refseq | XP_009785851.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Refseq | XP_009785852.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X2 | ||||
Refseq | XP_016434468.1 | 0.0 | PREDICTED: MADS-box protein FBP24-like | ||||
Swissprot | Q9ATE5 | 1e-141 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A1S3X444 | 0.0 | A0A1S3X444_TOBAC; MADS-box protein FBP24-like | ||||
TrEMBL | A0A1U7X127 | 0.0 | A0A1U7X127_NICSY; MADS-box protein FBP24 isoform X1 | ||||
STRING | XP_009785850.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 8e-64 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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