PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016434462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26849.9 Da PI: 10.0685 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.2e-18 | 133 | 216 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ps+v+ +l lp +f++++ ++++ t+tl de+g++W + +k++ l++GWk+F+ +++L +gD +vF+l++ ++f + XP_016434462.1 133 SMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPTKF--KAY 216 689*****************9995..346679***************555555....9***********************997777..444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-24 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 124 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-26 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 13.493 | 130 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-24 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-16 | 133 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVMSKVKYEE LRQQRLEENK KRMEELNLPL LTQALKLSSS PKPSPMKKVK PRITRTELVS 60 VRRSPRVANK PAPEYKEVIY YERVMIPRRM STPRKRDLSN MVYATDEERA ASIEKAEKLE 120 ASLGPDYPIL VRSMLPSHVS GGFWLGLPSN FCRKNLPRRD DTITLIDETG EEWPTVYLAQ 180 KNGLSGGWKK FAVDHDLADG DAIVFHLIRP TKFKAYIIRV NNVSESESTE TSTN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-50 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783454.1 | 1e-173 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_016434462.1 | 1e-173 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 2e-70 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1S3X3J5 | 1e-171 | A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A1U7X950 | 1e-171 | A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like | ||||
STRING | XP_009783454.1 | 1e-172 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-65 | B3 family protein |
Publications ? help Back to Top | |||
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