PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434399.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 335aa    MW: 36098.7 Da    PI: 8.4708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07174195627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     Cr +  t tC++G++C+F Hg+
  XP_016434399.1 174 CRWWGDTSTCRFGSKCRFVHGK 195
                     555556889***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-11166200IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028168195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-8168200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.037168196IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4173195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDFFYGKSND SQASKVRSFD VSPINTQNFI GRGRFYPGPK TRILDPYASS DSSGSSSNRV  60
LSPLARYLHS SSPVPFARDS LERRSLVNSS SGSRSSSTAA GVLRSSLASI ENIEIPPAFR  120
TPVKVEEDVV VMDGILVEPK HSSRAKSLPS TSDSGRLSSS TSGSENSSHK SDVCRWWGDT  180
STCRFGSKCR FVHGKEDLRP TAFANRNQSE ALSSRSYSSG SCAYGPRVRS VHHQVNSAAS  240
STESAAMATP TTVKKVVSTK DKEPPSSDSS PSSTTSTIAI SDTDWSPLDD NIEVSLNSSG  300
EKCPSREDVD AHIQTVLYGL SGRKRLPAFV EFSEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434399.10.0PREDICTED: putative protein TPRXL
RefseqXP_016434400.10.0PREDICTED: putative protein TPRXL
RefseqXP_016434401.10.0PREDICTED: putative protein TPRXL
TrEMBLA0A1S3X3910.0A0A1S3X391_TOBAC; Uncharacterized protein
STRINGXP_009768244.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824