PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434105.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92114.4 Da    PI: 6.4667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_016434105.1 17 KYVRYTPEQVEALERLYHDCPKPTSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START171.46e-541613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++++ l+v+ ++  g+++l 
  XP_016434105.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDALNVLPTAngGTIELL 254
                     789*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_016434105.1 255 YMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 349
                     ******************************************99988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt+va+l+++++
  XP_016434105.1 350 ESSAVLAQKTTVAALRYLRQ 369
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371276IPR001356Homeobox domain
SMARTSM003897.4E-161480IPR001356Homeobox domain
SuperFamilySSF466891.28E-161680IPR009057Homeodomain-like
CDDcd000869.77E-171777No hitNo description
PfamPF000463.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826.245151379IPR002913START domain
CDDcd088755.71E-76155371No hitNo description
SMARTSM002343.9E-41160370IPR002913START domain
Gene3DG3DSA:3.30.530.207.2E-22160365IPR023393START-like domain
SuperFamilySSF559611.19E-36160372No hitNo description
PfamPF018529.3E-52161369IPR002913START domain
PfamPF086703.1E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MASCKDGKTS SVLDNGKYVR YTPEQVEALE RLYHDCPKPT SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSS QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDAL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSAVLAQKTT  360
VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM  420
DDITILVNSS PDKLMGLNLS FANGFSSLSN AVMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGAQVGNFGG QVILPLAHTV EHEELLEVIK LEGVGHSPED  540
TIMPRDMFLL QLCSGMDENA VGTSAELIFA PIDASFADDA PLLPSGFRII SLESGKESSS  600
PNRTLDLTSA LETGPAENKV GNDLHTNGGT SRSVMTIAFQ FAFESHMQEN VASMARQYVR  660
SIISSVQRVA LALSPSHLGS HGGLRLPLGT PEAHTLARWI CQSYRCFLGV ELLKSIAEGS  720
DSILKSLWHH SDAIICCSAK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGKKNL  780
CTEFPQIMQQ GFACLQGGIC LSSMSRPISY ERAVAWKVMN EEDSPHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593967.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_016434105.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S3X2860.0A0A1S3X286_TOBAC; homeobox-leucine zipper protein ATHB-15-like isoform X2
STRINGXP_009593967.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]