PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433967.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 243aa    MW: 28038.2 Da    PI: 7.9904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-131459148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +l+ +v ++G  +W+  ++     R++k+c++rw++yl
   XP_016433967.1 14 KGTWTPDEDRKLAAYVSKYGCWNWRQLPKFAA--RCGKSCRLRWLNYL 59
                     799*****************99*********7..************97 PP
2Myb_DNA-binding54.33.1e-1765108146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEde++ +++++ G++ W+ Ia++++ gR+++++k++w++
   XP_016433967.1  65 RGNYTKEEDEIIMKLHAEIGNK-WSVIAAHLP-GRSDNDIKNHWHT 108
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.806959IPR017930Myb domain
SuperFamilySSF466891.04E-2811106IPR009057Homeodomain-like
SMARTSM007178.0E-101361IPR001005SANT/Myb domain
PfamPF002498.6E-131459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-221566IPR009057Homeodomain-like
CDDcd001672.15E-81659No hitNo description
PROSITE profilePS5129425.08560114IPR017930Myb domain
SMARTSM007176.5E-1664112IPR001005SANT/Myb domain
PfamPF002499.0E-1665108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2667113IPR009057Homeodomain-like
CDDcd001677.62E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MARTRCYDKS GLKKGTWTPD EDRKLAAYVS KYGCWNWRQL PKFAARCGKS CRLRWLNYLQ  60
PNIKRGNYTK EEDEIIMKLH AEIGNKWSVI AAHLPGRSDN DIKNHWHTSL KKRSTREYST  120
STDSIKRSSN NSYQANSQKK RRENETQLNA NESFQLSPMQ SCSTEVSSCA TIDQNVENIH  180
GEREVFQEEI FEVSSGSFWT EPFLVDSFNT ASDCFVPSFD DHGVFVSPFS PVMSYGELLC  240
SYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121135107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433967.10.0PREDICTED: myb-related protein Myb4-like isoform X2
TrEMBLA0A1S3X2440.0A0A1S3X244_TOBAC; myb-related protein Myb4-like isoform X2
STRINGXP_009779987.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-51myb domain protein 15