PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016433629.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 827aa MW: 91565.1 Da PI: 8.2456

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016433629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	322	422	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_016433629.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 414 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_016433629.1 415 LLMGFRKA 422 88888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-29	314	427	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-19	319	421	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-22	320	421	No hit	No description
SMART	SM01019	1.9E-20	322	423	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	322	423	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-16	322	422	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.054	586	636	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.3E-9	591	633	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MDSKICMNGV CGATSSIEWK KGWPLKSGEF AYLCDKCGTA YEQLGFCDLF HSEDTGWREC 60 ISCGKRLHCG CIASSSLLEL LDSGGINCVG CARSCQLHAT PNHVKAKAFG TSNSNSVGET 120 PSTSLGSQMN GSEPKKREGS DGVDPVLVLP HQNGNTNKPI GQIKMEEAFH PAGESGCTFS 180 SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSPNTKL FPATVDEGDL 240 NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP 300 RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR 420 KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSMNLSS 480 KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS 540 WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRFSGEQE QWAQCDNCFK 600 WRRLPADYLL PPQWTCQDNI FYHSRCSCSV PDDLTSRELE YLLKMDKDLK KRRNAAGQRT 660 AQAHDSSDLD SHANGTGVAG DVRERGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP 720 TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEAD 780 PSDRERSGSE TLARGHSSNQ LQKLPETTSK SSARDISEAE WSNKLSF

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MDSKICMNGV CGATSSIEWK KGWPLKSGEF AYLCDKCGTA YEQLGFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCVG CARSCQLHAT PNHVKAKAFG TSNSNSVGET  120
PSTSLGSQMN GSEPKKREGS DGVDPVLVLP HQNGNTNKPI GQIKMEEAFH PAGESGCTFS  180
SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSPNTKL FPATVDEGDL  240
NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSMNLSS  480
KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS  540
WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRFSGEQE QWAQCDNCFK  600
WRRLPADYLL PPQWTCQDNI FYHSRCSCSV PDDLTSRELE YLLKMDKDLK KRRNAAGQRT  660
AQAHDSSDLD SHANGTGVAG DVRERGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIGQRNQLMW SSKEETEVDS FSRQVKPEAD  780
PSDRERSGSE TLARGHSSNQ LQKLPETTSK SSARDISEAE WSNKLSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-68	300	429	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	645	652	DKDLKKRR
2	730	741	KRRFKTLMMRKK
3	730	743	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016433629.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1S3X134	0.0	A0A1S3X134_TOBAC; B3 domain-containing transcription repressor VAL2-like isoform X2
STRING	XP_009589564.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]