PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016433590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 542aa MW: 58889.8 Da PI: 8.5978 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016433590.1 100 FVCEICNKGFQRDQNLQLHRRGH 122 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_016433590.1 176 WKCEKCSKKYAVQSDWKAHSKTC 198 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 99 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.66E-6 | 99 | 122 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 141 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 164 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.66E-6 | 171 | 196 | No hit | No description |
SMART | SM00355 | 140 | 176 | 196 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNTITGGI YPPQYNFAPP 60 NQQVQAQHQI KKKRNQPGNP DPGAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR 120 GHNLPWKLKQ RTSKEIRKKV YVCPEPSCLH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK 180 CSKKYAVQSD WKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCDALAEE TARAITGDPI 240 LPSQTASSSH MNLQFHPSQF NSHEFPATFS LKKEQQTGFN LRPEIPPWLM TCQPLVGTGG 300 PGPGLPPPQP IDLSSSIFQS TRFDQDYTPN HGQDVNPNPS PNFNSTGGLG SPHISATALL 360 QKAAQMGATM SNKSSTVSAA ATGPSPTMLM RPHQFHVSAA AVESVSNNTT DVGLNLSSSE 420 DLTTGFLNSL TSYGNKAATI TVAAAAATAT VSPLTSAPSP TSFLMTSFSS ANTTGFEGSN 480 FEDEFGGIGI LNSKKGNDAN DDMTKDFLGL RPLSHSDIFN IAGLVNTTSN ENQSQNHKTW 540 QS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 172 | 233 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 172 | 233 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 138 | KLKQRTSKEIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774627.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Refseq | XP_009774629.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Refseq | XP_016433584.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Refseq | XP_016433590.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-126 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A1S3X0Y7 | 0.0 | A0A1S3X0Y7_TOBAC; protein indeterminate-domain 7-like | ||||
TrEMBL | A0A1U7W3K5 | 0.0 | A0A1U7W3K5_NICSY; zinc finger protein NUTCRACKER-like | ||||
STRING | XP_009774627.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-112 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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