PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016433584.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 542aa MW: 58889.8 Da PI: 8.5978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016433584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016433584.1 100 FVCEICNKGFQRDQNLQLHRRGH 122 89*******************88 PP
2	zf-C2H2	12.6	0.00041	176	198	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_016433584.1 176 WKCEKCSKKYAVQSDWKAHSKTC 198 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	99	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.66E-6	99	122	No hit	No description
PROSITE profile	PS50157	10.949	100	122	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	141	171	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-4	164	197	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.66E-6	171	196	No hit	No description
SMART	SM00355	140	176	196	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNTITGGI YPPQYNFAPP 60 NQQVQAQHQI KKKRNQPGNP DPGAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR 120 GHNLPWKLKQ RTSKEIRKKV YVCPEPSCLH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK 180 CSKKYAVQSD WKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCDALAEE TARAITGDPI 240 LPSQTASSSH MNLQFHPSQF NSHEFPATFS LKKEQQTGFN LRPEIPPWLM TCQPLVGTGG 300 PGPGLPPPQP IDLSSSIFQS TRFDQDYTPN HGQDVNPNPS PNFNSTGGLG SPHISATALL 360 QKAAQMGATM SNKSSTVSAA ATGPSPTMLM RPHQFHVSAA AVESVSNNTT DVGLNLSSSE 420 DLTTGFLNSL TSYGNKAATI TVAAAAATAT VSPLTSAPSP TSFLMTSFSS ANTTGFEGSN 480 FEDEFGGIGI LNSKKGNDAN DDMTKDFLGL RPLSHSDIFN IAGLVNTTSN ENQSQNHKTW 540 QS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNTITGGI YPPQYNFAPP  60
NQQVQAQHQI KKKRNQPGNP DPGAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RTSKEIRKKV YVCPEPSCLH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK  180
CSKKYAVQSD WKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCDALAEE TARAITGDPI  240
LPSQTASSSH MNLQFHPSQF NSHEFPATFS LKKEQQTGFN LRPEIPPWLM TCQPLVGTGG  300
PGPGLPPPQP IDLSSSIFQS TRFDQDYTPN HGQDVNPNPS PNFNSTGGLG SPHISATALL  360
QKAAQMGATM SNKSSTVSAA ATGPSPTMLM RPHQFHVSAA AVESVSNNTT DVGLNLSSSE  420
DLTTGFLNSL TSYGNKAATI TVAAAAATAT VSPLTSAPSP TSFLMTSFSS ANTTGFEGSN  480
FEDEFGGIGI LNSKKGNDAN DDMTKDFLGL RPLSHSDIFN IAGLVNTTSN ENQSQNHKTW  540
QS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	172	233	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	172	233	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	138	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774627.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_009774629.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_016433584.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_016433590.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-126	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S3X0Y7	0.0	A0A1S3X0Y7_TOBAC; protein indeterminate-domain 7-like
TrEMBL	A0A1U7W3K5	0.0	A0A1U7W3K5_NICSY; zinc finger protein NUTCRACKER-like
STRING	XP_009774627.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]