PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433398.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 247aa    MW: 27645.7 Da    PI: 5.4908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1974123356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++ge
  XP_016433398.1  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRGE 123
                     9*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3073135IPR001471AP2/ERF domain
PROSITE profilePS5103221.94473131IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1973125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-2773124IPR001471AP2/ERF domain
CDDcd000181.09E-2874125No hitNo description
PRINTSPR003675.6E-127485IPR001471AP2/ERF domain
PfamPF008472.2E-1274123IPR001471AP2/ERF domain
PRINTSPR003675.6E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MCGGAILADL IPRRDRCASS TDLWPNSADF WPSSSFAKPI MSNQNVTATP KRAQPPTGNE  60
QIQKTKKKQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDKEARKI  120
RGENRYSTAY ESYDTSYNHE SNNCDGSFCS LENQNTEPVL EYPLAYKNSS GSVYNGSEGQ  180
KAENEVEKLT EELMAYESLM KFYEIPYVDG QSVAATVNPA GEAVVGGGSM DLWTFDDVSP  240
TLPITQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1874122352ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-18741231565Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0011480.0KJ001148.1 Nicotiana tabacum ethylene response factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311590.10.0ethylene-responsive transcription factor ERF071-like
TrEMBLW8SVK80.0W8SVK8_TOBAC; Ethylene response factor 2
STRINGXP_009774382.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-40ERF family protein