PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016433214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 23393.2 Da PI: 8.7067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 11 | 53 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+l+ +a +++ g +W +Ia +++ g++++++ ++ XP_016433214.1 11 WTRYEDKLFEEALVMYPEGvvnRWQKIAIHVP-GKSPEDVMAHY 53 ********************************.********998 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.5e-14 | 109 | 153 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+++W++I+r + +Rt+ q+ s+ qky XP_016433214.1 109 PWTPEEHRLFLIGLERYGKDDWRSISRNVVVTRTPMQVASHAQKY 153 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.484 | 6 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 7 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-5 | 9 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.99E-12 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-8 | 11 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.68E-8 | 11 | 53 | No hit | No description |
PROSITE profile | PS51294 | 20.217 | 102 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-17 | 102 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-16 | 105 | 157 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.4E-11 | 106 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 106 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-12 | 109 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-9 | 109 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MYKIHSTSSI WTRYEDKLFE EALVMYPEGV VNRWQKIAIH VPGKSPEDVM AHYDALVHDV 60 FVIDSGRVEI PSYHDRSSEW EPESGTSRNI SFMSNYKNHT EQIRKKGTPW TPEEHRLFLI 120 GLERYGKDDW RSISRNVVVT RTPMQVASHA QKYFQRQEDI KKKERKRSSI HDIAVDANIL 180 LPQNNNQNQG GYQNYNFPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-13 | 1 | 90 | 1 | 90 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792792.1 | 1e-149 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016433214.1 | 1e-149 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-47 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3X002 | 1e-147 | A0A1S3X002_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7XL67 | 1e-147 | A0A1U7XL67_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009792792.1 | 1e-148 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-67 | MYB family protein |
Publications ? help Back to Top | |||
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