PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016433104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 358aa MW: 39505.2 Da PI: 6.2549 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 164 | 214 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge XP_016433104.1 164 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 214 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.57E-34 | 163 | 223 | No hit | No description |
SMART | SM00380 | 5.8E-38 | 164 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 164 | 222 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 164 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 164 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 165 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 165 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 187 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAAAIDIYSN NSSYFSDPLS EELMKALEPF MKGASCSSSV SPSLSPSSSS PSTSSSYFYP 60 FGEPNLYTDF CTIPSLSFNH TGLVAETGSI GLNHLTPSQI FQIQAQIQFQ NQQQQQLLLQ 120 QQQSLGLLPS TPTYSKNLNS MNYLGLKPVP MKQTGGAVQK PTKLYRGVRQ RHWGKWVAEI 180 RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF PHLRHQLNNE LSDFKPLHSS 240 VDAKLQAICQ NLANPKNPTN SDDLSSNNNT VSKPRKSRKA AAKVDSGSVQ DCPENVNVKI 300 EATSSSSPAP SEESSLSVVT SSPESDITFL DFIEPSFDES EDFFLPKYPS VEIDWAAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 163 | 221 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN649467 | 0.0 | FN649467.1 Nicotiana benthamiana mRNA for transcription factor DREB2a. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016433104.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A1S3WZP1 | 0.0 | A0A1S3WZP1_TOBAC; ethylene-responsive transcription factor RAP2-13-like | ||||
STRING | XP_009616719.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 7e-48 | ERF family protein |