PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433075.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 263aa    MW: 29109.2 Da    PI: 4.552
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.46.2e-131693098
           NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++adedv +i+  +P l+ska elf+ +l  r++  + ++  +t++   +++++++ ++fdfl d+v r
  XP_016433075.1  1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 69
                    899***************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.7E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.7E-18168IPR009072Histone-fold
SuperFamilySSF471135.82E-19170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKK GAKTMNSFHL KQCIQSFNVF  60
DFLKDVVSRV PDLGGSDGGA ESATKRRKIA EEDDHDSDDD IKRSRMHETA HTSGSGRGRG  120
RGRGRGRGRG ARALERGDSN VHCDKLEDPA DVPNQNNEKQ KQNDERMDYV AEPADSKNIS  180
AGKCPEVPAR NFDLNIDLNE SVESTAIPAE APSTSKMPPP EVKHEEIPGW SLSEMEKMAI  240
DPIQLANLNR GLDEEEEDYD EEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A9e-151552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118128RGRGRGRGRGR
2120129RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2446008e-34AC244600.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence.
GenBankHG9754508e-34HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755238e-34HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433075.10.0PREDICTED: dr1-associated corepressor-like
RefseqXP_018628198.10.0PREDICTED: dr1-associated corepressor-like
TrEMBLA0A1S3WZD00.0A0A1S3WZD0_TOBAC; dr1-associated corepressor-like
STRINGXP_009607736.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.12e-50NF-YC family protein