PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016432888.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 359aa    MW: 40943 Da    PI: 10.3898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016432888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028151174123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H +  H
  XP_016432888.1 151 YICSVCGRKCKTNLDLKKHFKQlH 174
                     89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.7E-771141IPR029060PIN domain-like
PROSITE profilePS5015710.907151179IPR007087Zinc finger, C2H2
SMARTSM003550.0051151174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153174IPR007087Zinc finger, C2H2
CDDcd061678.43E-13165305No hitNo description
Gene3DG3DSA:3.40.50.10104.7E-7236306IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MLMSSIFSSI HLKTSSFFPT PLPTNHQNPF PLTFSFKPNS PIAPIKWHIS SCAAGQEIDM  60
ERTKEGLYTA KPKKVVILWD LDNKPPRGPP YEAAMSLKKV AQFFGEVVDM SAYANRHAFI  120
HLPQWVAEQR RERRHLDVLE RKGAVTPSEP YICSVCGRKC KTNLDLKKHF KQLHERERQK  180
KLSRMRSLKG KKRQKFKERH VDGNYKYIEA ARSLITPKVG YGLAAELRRA GVFVKTVADK  240
PQAADWALKK QMQHSMTRGI DWLFLVSDDS DFCDMLRRAK EANLGTVVVG DMDRALGRHA  300
DLWIPWNGVE NGEIKEKDLV LKLERRRESW GRSNARFSVS EFDGGISGEG TSVGTLMXV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432887.10.0PREDICTED: uncharacterized protein LOC107759456
RefseqXP_016432888.10.0PREDICTED: uncharacterized protein LOC107759456
RefseqXP_016432889.10.0PREDICTED: uncharacterized protein LOC107759456
RefseqXP_016432890.10.0PREDICTED: uncharacterized protein LOC107759456
RefseqXP_016432891.10.0PREDICTED: uncharacterized protein LOC107759456
TrEMBLA0A1S3WYU60.0A0A1S3WYU6_TOBAC; uncharacterized protein LOC107759456
STRINGXP_009623477.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-165C2H2-like zinc finger protein