PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016432839.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 922aa MW: 103122 Da PI: 6.1122

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016432839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	613	664	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_016432839.1 613 AEKNITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 664 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.733	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-25	616	664	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.37E-21	816	904	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.6E-20	822	903	No hit	No description
SMART	SM00666	5.7E-20	824	907	IPR000270	PB1 domain
PROSITE profile	PS51745	21.681	824	907	IPR000270	PB1 domain
Pfam	PF00564	1.1E-15	826	903	IPR000270	PB1 domain
CDD	cd06407	3.29E-37	826	903	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MSMDERFVVT NTFLTTQFDA FMDLDYMDEL LLEGCFLETI DDRDFVHHRP SISNMPFDSS 60 FVWPTLLDTN GFEFSGSPSK DGQQERQRSS FSKNLSISQF QELNSAKVQS FGDNSINAMC 120 SSGQSENCLF DAPELSRRWW IGPNASSSVM DRLIQALGYI KNFSKDKDIL IQIWVPIYRD 180 GKRVLSTNDQ PFSLDLNCPR LAHYRQASLS YQFPANDDSK EIVGLPGRVF LDKVPEWSPD 240 VQFFQMEEYP RVGHAQQHNV RGTFAVPVFE QGSHNCLSVI EVVMTTQKIK YGSELESVCK 300 ALEAVDLRSS EVSSTLSAKA CDLTYQAALS EILEVLKSAC KTHGLPLAQT WVPCIQHGKG 360 GSRHSNENLV RCVSTEDSAC YVADPRVQGF HEACSEHHLL KGQGVVGSAF MTNQPCFTSD 420 LTSYSKAEYP LSHYARMFGL HAAVAIPLRS MSTGSSDFVL EFLLPPNCRN PEEHKSMLTS 480 LSIIIQNVCQ TYRVVSEKEL QEETVSLGEV TSLAASEYTE EVREKERKGS IVSSQERTSW 540 TSSHIEVQQT SSVISAFQDE KPVEVLTEEP VTFRNQTNSG SATTFAFSRN YRTSGEGISH 600 TWRKARDRRR LKAEKNITLQ ILQQYFAGSL KDAAKSIGVC PTTLKRICRQ HGIQRWPSRK 660 IKKVGLSLER IQRVINSVQG VSGTLQIESF YSDFPELASS NISRSSPFAD PTSNNHPEDL 720 NRQPESGGND AAISKSVSSS CSQGSSSSQR STGTQLAGHE DPVAEEASDN HALKRVNSDA 780 ELHLSSEALN PLPRSQSHTS LTESPESVSL SPVKKSLWRS QEGAPRIKVI HGEEKIRFRM 840 QKNWGYKELK REIARRFGVD DPIGFHLKYL DDDSDWVLLA CEADLEECIH VCWSSQNQTI 900 RLLFLCDLQP HLGSSFDSSS SL

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MSMDERFVVT NTFLTTQFDA FMDLDYMDEL LLEGCFLETI DDRDFVHHRP SISNMPFDSS  60
FVWPTLLDTN GFEFSGSPSK DGQQERQRSS FSKNLSISQF QELNSAKVQS FGDNSINAMC  120
SSGQSENCLF DAPELSRRWW IGPNASSSVM DRLIQALGYI KNFSKDKDIL IQIWVPIYRD  180
GKRVLSTNDQ PFSLDLNCPR LAHYRQASLS YQFPANDDSK EIVGLPGRVF LDKVPEWSPD  240
VQFFQMEEYP RVGHAQQHNV RGTFAVPVFE QGSHNCLSVI EVVMTTQKIK YGSELESVCK  300
ALEAVDLRSS EVSSTLSAKA CDLTYQAALS EILEVLKSAC KTHGLPLAQT WVPCIQHGKG  360
GSRHSNENLV RCVSTEDSAC YVADPRVQGF HEACSEHHLL KGQGVVGSAF MTNQPCFTSD  420
LTSYSKAEYP LSHYARMFGL HAAVAIPLRS MSTGSSDFVL EFLLPPNCRN PEEHKSMLTS  480
LSIIIQNVCQ TYRVVSEKEL QEETVSLGEV TSLAASEYTE EVREKERKGS IVSSQERTSW  540
TSSHIEVQQT SSVISAFQDE KPVEVLTEEP VTFRNQTNSG SATTFAFSRN YRTSGEGISH  600
TWRKARDRRR LKAEKNITLQ ILQQYFAGSL KDAAKSIGVC PTTLKRICRQ HGIQRWPSRK  660
IKKVGLSLER IQRVINSVQG VSGTLQIESF YSDFPELASS NISRSSPFAD PTSNNHPEDL  720
NRQPESGGND AAISKSVSSS CSQGSSSSQR STGTQLAGHE DPVAEEASDN HALKRVNSDA  780
ELHLSSEALN PLPRSQSHTS LTESPESVSL SPVKKSLWRS QEGAPRIKVI HGEEKIRFRM  840
QKNWGYKELK REIARRFGVD DPIGFHLKYL DDDSDWVLLA CEADLEECIH VCWSSQNQTI  900
RLLFLCDLQP HLGSSFDSSS SL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016432838.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_016432839.1	0.0	PREDICTED: protein NLP5-like
TrEMBL	A0A1S3WYX3	0.0	A0A1S3WYX3_TOBAC; protein NLP5-like
STRING	XP_009773664.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein