PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432681.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 340aa MW: 38911.7 Da PI: 5.13 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s XP_016432681.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58 68***********************************************8 PP | |||||||
2 | K-box | 17 | 2.5e-07 | 108 | 170 | 7 | 70 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++ e+ qqe+ k k ++e + r +R + G+ e ++ e q e+ L++ lk++ ++K+ XP_016432681.1 108 A-SVDSHIEEFQQEILKYKTQLEDMDRRLRMYEGDLCEITTVCEAQYREEILQETLKQVQARKQ 170 3.567889******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.857 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.63E-39 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-30 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASPASV DSHIEEFQQE 120 ILKYKTQLED MDRRLRMYEG DLCEITTVCE AQYREEILQE TLKQVQARKQ VLEETYNSPQ 180 AQTTTQPQMD FASQNVNVVN NVATSDSIPN TSSNTFMDWV PHSQRDPHVQ ILNFLDSNGL 240 LPFRDEADQR MENMLPPSLT QLHTPTVSAV VTDHLSPNNR FENDPQRPTS SFEGIIDVNN 300 APWPPLYPTG NDPFPETQPR ERALLELFLS QLTPVNQDPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
3mu6_A | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6c9l_A | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 2e-81 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790827.1 | 0.0 | PREDICTED: transcription factor CAULIFLOWER-like isoform X2 | ||||
Refseq | XP_016432681.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 6e-53 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A1S3WYS1 | 0.0 | A0A1S3WYS1_TOBAC; agamous-like MADS-box protein AGL104 isoform X2 | ||||
TrEMBL | A0A1U7XFH7 | 0.0 | A0A1U7XFH7_NICSY; transcription factor CAULIFLOWER-like isoform X2 | ||||
STRING | XP_009790826.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-55 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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