PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016432341.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 358aa MW: 41523.8 Da PI: 8.853

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016432341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.5	1.5e-15	16	94	9	99
HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +p f+ ++ g+kk + + ++g++W vk+ ++++ l++GW +F+++++L+ gD++vF+++g++ef v++f++ XP_016432341.1 16 PGFKHA-LKIPVGFL-KYlkGYKK----EHAILRKDGKKWLVKV--NGYQ----LEEGWGKFAEEHDLQLGDMLVFRHEGNMEF--EVTIFDS 94 455555.******.66555543....4567788*****..6665....***********************99999..9999986 PP
2	B3	46.3	7.8e-15	144	219	11	91
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 lk g l++p +fa+e+g+ + ++ l+++de+ rsW+++l + +r+++++ W eF an+Lk+gD ++F+ + + +++ XP_016432341.1 144 LK-GYLCIPTRFAAENGLTN-KNCGLIIRDERQRSWNLRL--YTSCSRVYIGGIWGEFRVANDLKVGDRIMFEIVTN-GEK 219 44.459********7764.44579**********..889999***********************7764.444 PP
3	B3	47.7	2.8e-15	256	336	4	87
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++++++ k++ l++p +fa+++g+++++ +++l+de rsW+v l + ++ + +GW +F an L++gD+ F+l+ + XP_016432341.1 256 STIKPYSIKKSVLYFPLDFAKSNGLINRK-CEMILKDEAQRSWSVWL--GRDAHHFGIIRGWTKFRAANCLQVGDVYKFELITN 336 56789999*************999766.5************..9999999999*******************9864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.5E-22	4	97	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-20	7	101	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.689	7	95	IPR003340	B3 DNA binding domain
CDD	cd10017	7.78E-18	8	93	No hit	No description
SMART	SM01019	6.3E-16	10	95	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-12	18	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.9E-16	132	222	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-15	133	224	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	4.1E-7	135	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-13	145	222	IPR003340	B3 DNA binding domain
CDD	cd10017	2.57E-12	145	212	No hit	No description
PROSITE profile	PS50863	10.32	150	227	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.04E-19	248	346	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.7E-18	249	345	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-15	252	345	No hit	No description
PROSITE profile	PS50863	12.872	253	347	IPR003340	B3 DNA binding domain
SMART	SM01019	7.3E-17	253	347	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-14	255	336	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MKVRPVKPHF FKPIQPGFKH ALKIPVGFLK YLKGYKKEHA ILRKDGKKWL VKVNGYQLEE 60 GWGKFAEEHD LQLGDMLVFR HEGNMEFEVT IFDSSHCDRE YAEYMLDEEE ANNVEFKDKP 120 SAEADTHNPF GQSHFLCTVR PYCLKGYLCI PTRFAAENGL TNKNCGLIIR DERQRSWNLR 180 LYTSCSRVYI GGIWGEFRVA NDLKVGDRIM FEIVTNGEKP IWKFHDISIK PSDMIPLNAQ 240 VSTPTSGDND LPYFISTIKP YSIKKSVLYF PLDFAKSNGL INRKCEMILK DEAQRSWSVW 300 LGRDAHHFGI IRGWTKFRAA NCLQVGDVYK FELITNAKIP IAYFRCKYSA EVAKREDH

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MKVRPVKPHF FKPIQPGFKH ALKIPVGFLK YLKGYKKEHA ILRKDGKKWL VKVNGYQLEE  60
GWGKFAEEHD LQLGDMLVFR HEGNMEFEVT IFDSSHCDRE YAEYMLDEEE ANNVEFKDKP  120
SAEADTHNPF GQSHFLCTVR PYCLKGYLCI PTRFAAENGL TNKNCGLIIR DERQRSWNLR  180
LYTSCSRVYI GGIWGEFRVA NDLKVGDRIM FEIVTNGEKP IWKFHDISIK PSDMIPLNAQ  240
VSTPTSGDND LPYFISTIKP YSIKKSVLYF PLDFAKSNGL INRKCEMILK DEAQRSWSVW  300
LGRDAHHFGI IRGWTKFRAA NCLQVGDVYK FELITNAKIP IAYFRCKYSA EVAKREDH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016432341.1	0.0	PREDICTED: B3 domain-containing protein REM10-like
Refseq	XP_018630037.1	0.0	PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBL	A0A1S3WXW6	0.0	A0A1S3WXW6_TOBAC; B3 domain-containing protein REM10-like
STRING	XP_009614320.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-56	B3 family protein