PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016432253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 481aa MW: 52650.4 Da PI: 6.9922 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91 | 9.7e-29 | 223 | 281 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK +g+++prsYYrC+ a Cpv+k+v+r+ ed +v+++tYeg+Hnh+ XP_016432253.1 223 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCVEDMSVLITTYEGTHNHS 281 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 207 | 283 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 214 | 283 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.428 | 217 | 283 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-34 | 222 | 282 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 223 | 280 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MEKKMDNSIT EEAVVARNEG NNHEEEAVRK SLKDDEFKSA IAEVNELRLE NARLRMLLEQ 60 VEEDYNSLQS RVSNISQPEF NQSASPTCTT ENIIAEESEL VSLRLGRSPS RIDQFKKDDK 120 KRHSCHSSDG LKLGLDYNIA VSKSDPIKPN TDPSPDKVLE TKTVDARESG PTSEIVKTMR 180 RGDNEVSQPS PSVKRAGDDE VSQPNVKRAR VSVRTKCDYP TINDGCQWRK YGQKISRGNP 240 CPRSYYRCSV APLCPVRKQV QRCVEDMSVL ITTYEGTHNH SLPIEATAMA STTSAAASML 300 LSGSSSSQSA NKDFRNLPNN SKSTPLYLSN SPSNSNPFPT ITLDFTTFPT TSSFTSFNFP 360 SNFQSNTGFL SNSLNFSSPE SDTLSKILGS GYVDYDPTTS LPYSKSLTNI GSSNLGKPSP 420 APKQFDQPVL GKSKNSISNN LKEESSQQAL TETLTKAIAS DPSFQSVLAA AISSMVGATK 480 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 209 | 283 | 1 | 74 | WRKY transcription factor 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY220477 | 0.0 | AY220477.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 126 (ACRE126) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432253.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | A0A1S3WX58 | 0.0 | A0A1S3WX58_TOBAC; probable WRKY transcription factor 72 | ||||
STRING | XP_009600779.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-55 | WRKY DNA-binding protein 72 |