PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009805065.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 699aa    MW: 76268.9 Da    PI: 7.4802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009805065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07262282526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f + G C  Gd+C +aHg
  XP_009805065.1 262 PCPEFKK-GACAKGDSCEYAHG 282
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1527152IPR020683Ankyrin repeat-containing domain
PfamPF127966.3E-1066137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.5E-1768175IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.62670145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00370100IPR002110Ankyrin repeat
CDDcd002041.54E-1572152No hitNo description
PROSITE profilePS5008812.663105140IPR002110Ankyrin repeat
SMARTSM002481.5E-4105137IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.9E-4254283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019257284IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5257283IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4289320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.887292316IPR000571Zinc finger, CCCH-type
SMARTSM0035635292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MCSGSKSKVC PFDLNMDKKD GVSKNCSKLL ELSASDDLTG FICEVEKGCG IDELSFWYGR  60
KFGSKKMGFE ERTPLMIASM YGSIEILRFI IGTGKVDVNR ACGSDGATAL HCAAAGGSES  120
SIEVVKILVD ASADVNACDS SGNRPCDVIA SYPKWLRNSK RKSLELLLNG SLAELAELEE  180
EEGKAVIQTT KEGSEKKEYP IDTSLPDIND GIYGSDDFRM YCFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYNYTC VPCPEFKKGA CAKGDSCEYA HGVFESWLHP AQYRTRLCKD  300
ETGCSRKVCF FAHKQEELRP LYASTGSAIP SPKATPVSSM DMSTLSPLAL GSSSMMLPTT  360
TTTSTPPMSP AATCSSPMGG NMWQGKVNLT PPALQLPGSR LKTSLNARDL DLDMEMLGLE  420
SIRTQQQLRQ QLIDEMAGLS SPSYWKNDNR MGDLKPTNLD DVFGSMDSQL LSQLQGLSPR  480
MTSNTSSQLY SPSVSHMQGL SPKVTSNTSQ LQSPTGLQMR QNMNQFQGSY SNMSQSSSPL  540
RKPSTYGFDS SAAVAAAVMN SRSAAFAKQR SQSFIDRSGI GHRSGPNGIA NSPPLMSSNM  600
SDWGSPTGKL EWGFNSEDTN KLKRSQSFGF RGGNAAPTRS PITPSQVNEP DVSWVHSLVK  660
DVSSTGTGLY SSEQKRGSVR DTIPPWLEQM YIDQERIVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5073200.0KM507320.1 Petunia x hybrida CCCH-type zinc-finger protein (TZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009805065.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A1U7Z2F30.0A0A1U7Z2F3_NICSY; zinc finger CCCH domain-containing protein 29-like
STRINGXP_009805065.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein